Gene : Tp57577_TGAC_v2_gene35791 T. pratense v2
Defline:  (1 of 1) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  3
Name:  ? Tp57577_TGAC_v2_gene35791 Secondary Identifier:  ? PAC:35960812
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7039 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene35791 0.5kb upstream 0.5kb upstream 4467 true Tp57577_TGAC_v2_scaf_658: 8657-13123 Trifolium pratense
Tp57577_TGAC_v2_gene35791 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_658: 12624-13123 Trifolium pratense
Tp57577_TGAC_v2_gene35791 0.5kb downstream 0.5kb downstream 4467 true Tp57577_TGAC_v2_scaf_658: 8157-12623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_658: 8157-8656 Trifolium pratense
Tp57577_TGAC_v2_gene35791 1.0kb upstream 1.0kb upstream 4967 true Tp57577_TGAC_v2_scaf_658: 8657-13623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_658: 12624-13623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 1.0kb downstream 1.0kb downstream 4967 true Tp57577_TGAC_v2_scaf_658: 7657-12623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_658: 7657-8656 Trifolium pratense
Tp57577_TGAC_v2_gene35791 2.0kb upstream 2.0kb upstream 5967 true Tp57577_TGAC_v2_scaf_658: 8657-14623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_658: 12624-14623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 2.0kb downstream 2.0kb downstream 5967 true Tp57577_TGAC_v2_scaf_658: 6657-12623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_658: 6657-8656 Trifolium pratense
Tp57577_TGAC_v2_gene35791 5.0kb upstream 5.0kb upstream 8967 true Tp57577_TGAC_v2_scaf_658: 8657-17623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_658: 12624-17623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 5.0kb downstream 5.0kb downstream 8967 true Tp57577_TGAC_v2_scaf_658: 3657-12623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_658: 3657-8656 Trifolium pratense
Tp57577_TGAC_v2_gene35791 10.0kb upstream 10.0kb upstream 13967 true Tp57577_TGAC_v2_scaf_658: 8657-22623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_658: 12624-22623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 10.0kb downstream 10.0kb downstream 12623 true Tp57577_TGAC_v2_scaf_658: 1-12623 Trifolium pratense
Tp57577_TGAC_v2_gene35791 10.0kb downstream 10.0kb downstream 8656 false Tp57577_TGAC_v2_scaf_658: 1-8656 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303667 5265 Fabidae View MSA
124062992 5270 Rosid View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain