Gene : Tp57577_TGAC_v2_gene32451 T. pratense v2
Defline:  (1 of 4) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  11
Name:  ? Tp57577_TGAC_v2_gene32451 Secondary Identifier:  ? PAC:35951408
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-6809 Trifolium pratense pathologic  
Tpratense PWY-695 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene32451 0.5kb upstream 0.5kb upstream 3844 true Tp57577_TGAC_v2_scaf_193: 96492-100335 Trifolium pratense
Tp57577_TGAC_v2_gene32451 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_193: 99836-100335 Trifolium pratense
Tp57577_TGAC_v2_gene32451 0.5kb downstream 0.5kb downstream 3844 true Tp57577_TGAC_v2_scaf_193: 95992-99835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_193: 95992-96491 Trifolium pratense
Tp57577_TGAC_v2_gene32451 1.0kb upstream 1.0kb upstream 4344 true Tp57577_TGAC_v2_scaf_193: 96492-100835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_193: 99836-100835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 1.0kb downstream 1.0kb downstream 4344 true Tp57577_TGAC_v2_scaf_193: 95492-99835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_193: 95492-96491 Trifolium pratense
Tp57577_TGAC_v2_gene32451 2.0kb upstream 2.0kb upstream 5344 true Tp57577_TGAC_v2_scaf_193: 96492-101835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_193: 99836-101835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 2.0kb downstream 2.0kb downstream 5344 true Tp57577_TGAC_v2_scaf_193: 94492-99835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_193: 94492-96491 Trifolium pratense
Tp57577_TGAC_v2_gene32451 5.0kb upstream 5.0kb upstream 8344 true Tp57577_TGAC_v2_scaf_193: 96492-104835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_193: 99836-104835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 5.0kb downstream 5.0kb downstream 8344 true Tp57577_TGAC_v2_scaf_193: 91492-99835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_193: 91492-96491 Trifolium pratense
Tp57577_TGAC_v2_gene32451 10.0kb upstream 10.0kb upstream 13344 true Tp57577_TGAC_v2_scaf_193: 96492-109835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_193: 99836-109835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 10.0kb downstream 10.0kb downstream 13344 true Tp57577_TGAC_v2_scaf_193: 86492-99835 Trifolium pratense
Tp57577_TGAC_v2_gene32451 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_193: 86492-96491 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312106 5265 Fabidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain