Gene : Tp57577_TGAC_v2_gene32419 T. pratense v2
Defline:  (1 of 1) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  21
Name:  ? Tp57577_TGAC_v2_gene32419 Secondary Identifier:  ? PAC:35985958
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense ARO-PWY Trifolium pratense pathologic  
Tpratense PWY-6163 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene32419 0.5kb upstream 0.5kb upstream 7005 true Tp57577_TGAC_v2_scaf_196: 201199-208203 Trifolium pratense
Tp57577_TGAC_v2_gene32419 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_196: 207704-208203 Trifolium pratense
Tp57577_TGAC_v2_gene32419 0.5kb downstream 0.5kb downstream 7005 true Tp57577_TGAC_v2_scaf_196: 200699-207703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_196: 200699-201198 Trifolium pratense
Tp57577_TGAC_v2_gene32419 1.0kb upstream 1.0kb upstream 7505 true Tp57577_TGAC_v2_scaf_196: 201199-208703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_196: 207704-208703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 1.0kb downstream 1.0kb downstream 7505 true Tp57577_TGAC_v2_scaf_196: 200199-207703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_196: 200199-201198 Trifolium pratense
Tp57577_TGAC_v2_gene32419 2.0kb upstream 2.0kb upstream 8505 true Tp57577_TGAC_v2_scaf_196: 201199-209703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_196: 207704-209703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 2.0kb downstream 2.0kb downstream 8505 true Tp57577_TGAC_v2_scaf_196: 199199-207703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_196: 199199-201198 Trifolium pratense
Tp57577_TGAC_v2_gene32419 5.0kb upstream 5.0kb upstream 11505 true Tp57577_TGAC_v2_scaf_196: 201199-212703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_196: 207704-212703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 5.0kb downstream 5.0kb downstream 11505 true Tp57577_TGAC_v2_scaf_196: 196199-207703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_196: 196199-201198 Trifolium pratense
Tp57577_TGAC_v2_gene32419 10.0kb upstream 10.0kb upstream 16505 true Tp57577_TGAC_v2_scaf_196: 201199-217703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_196: 207704-217703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 10.0kb downstream 10.0kb downstream 16505 true Tp57577_TGAC_v2_scaf_196: 191199-207703 Trifolium pratense
Tp57577_TGAC_v2_gene32419 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_196: 191199-201198 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309838 5265 Fabidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain