Gene : Tp57577_TGAC_v2_gene19648 T. pratense v2
Defline:  (1 of 2) PTHR11177//PTHR11177:SF186 - CHITINASE // SUBFAMILY NOT NAMED Genomic Order:  24
Name:  ? Tp57577_TGAC_v2_gene19648 Secondary Identifier:  ? PAC:35992086
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-6902 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene19648 0.5kb upstream 0.5kb upstream 1731 true Tp57577_TGAC_v2_scaf_323: 200426-202156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_323: 200426-200925 Trifolium pratense
Tp57577_TGAC_v2_gene19648 0.5kb downstream 0.5kb downstream 1731 true Tp57577_TGAC_v2_scaf_323: 200926-202656 Trifolium pratense
Tp57577_TGAC_v2_gene19648 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_323: 202157-202656 Trifolium pratense
Tp57577_TGAC_v2_gene19648 1.0kb upstream 1.0kb upstream 2231 true Tp57577_TGAC_v2_scaf_323: 199926-202156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_323: 199926-200925 Trifolium pratense
Tp57577_TGAC_v2_gene19648 1.0kb downstream 1.0kb downstream 2231 true Tp57577_TGAC_v2_scaf_323: 200926-203156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_323: 202157-203156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 2.0kb upstream 2.0kb upstream 3231 true Tp57577_TGAC_v2_scaf_323: 198926-202156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_323: 198926-200925 Trifolium pratense
Tp57577_TGAC_v2_gene19648 2.0kb downstream 2.0kb downstream 3231 true Tp57577_TGAC_v2_scaf_323: 200926-204156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_323: 202157-204156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 5.0kb upstream 5.0kb upstream 6231 true Tp57577_TGAC_v2_scaf_323: 195926-202156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_323: 195926-200925 Trifolium pratense
Tp57577_TGAC_v2_gene19648 5.0kb downstream 5.0kb downstream 6231 true Tp57577_TGAC_v2_scaf_323: 200926-207156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_323: 202157-207156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 10.0kb upstream 10.0kb upstream 11231 true Tp57577_TGAC_v2_scaf_323: 190926-202156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_323: 190926-200925 Trifolium pratense
Tp57577_TGAC_v2_gene19648 10.0kb downstream 10.0kb downstream 11231 true Tp57577_TGAC_v2_scaf_323: 200926-212156 Trifolium pratense
Tp57577_TGAC_v2_gene19648 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_323: 202157-212156 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299909 5265 Fabidae View MSA
124072600 5270 Rosid View MSA
123749602 5271 Pentapetalae View MSA
122797171 5272 Eudicot View MSA
122049953 5273 Angiosperm View MSA
121348698 5274 Embryophyte View MSA
123380978 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain