Gene : Tp57577_TGAC_v2_gene30808 T. pratense v2
Defline:  (1 of 11) PF13229 - Right handed beta helix region (Beta_helix) Genomic Order:  3
Name:  ? Tp57577_TGAC_v2_gene30808 Secondary Identifier:  ? PAC:35959046
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene30808 0.5kb upstream 0.5kb upstream 4615 true Tp57577_TGAC_v2_scaf_795: 45186-49800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_795: 45186-45685 Trifolium pratense
Tp57577_TGAC_v2_gene30808 0.5kb downstream 0.5kb downstream 4615 true Tp57577_TGAC_v2_scaf_795: 45686-50300 Trifolium pratense
Tp57577_TGAC_v2_gene30808 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_795: 49801-50300 Trifolium pratense
Tp57577_TGAC_v2_gene30808 1.0kb upstream 1.0kb upstream 5115 true Tp57577_TGAC_v2_scaf_795: 44686-49800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_795: 44686-45685 Trifolium pratense
Tp57577_TGAC_v2_gene30808 1.0kb downstream 1.0kb downstream 5115 true Tp57577_TGAC_v2_scaf_795: 45686-50800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_795: 49801-50800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 2.0kb upstream 2.0kb upstream 6115 true Tp57577_TGAC_v2_scaf_795: 43686-49800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_795: 43686-45685 Trifolium pratense
Tp57577_TGAC_v2_gene30808 2.0kb downstream 2.0kb downstream 6115 true Tp57577_TGAC_v2_scaf_795: 45686-51800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_795: 49801-51800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 5.0kb upstream 5.0kb upstream 9115 true Tp57577_TGAC_v2_scaf_795: 40686-49800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_795: 40686-45685 Trifolium pratense
Tp57577_TGAC_v2_gene30808 5.0kb downstream 5.0kb downstream 9115 true Tp57577_TGAC_v2_scaf_795: 45686-54800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_795: 49801-54800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 10.0kb upstream 10.0kb upstream 14115 true Tp57577_TGAC_v2_scaf_795: 35686-49800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_795: 35686-45685 Trifolium pratense
Tp57577_TGAC_v2_gene30808 10.0kb downstream 10.0kb downstream 14115 true Tp57577_TGAC_v2_scaf_795: 45686-59800 Trifolium pratense
Tp57577_TGAC_v2_gene30808 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_795: 49801-59800 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312563 5265 Fabidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain