Gene : Tp57577_TGAC_v2_gene18594 T. pratense v2
Defline:  (1 of 4) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1) Genomic Order:  1630
Name:  ? Tp57577_TGAC_v2_gene18594 Secondary Identifier:  ? PAC:35978216
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene18594 0.5kb upstream 0.5kb upstream 1597 true Tp57577_TGAC_v2_LG1: 13461006-13462602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 13461006-13461505 Trifolium pratense
Tp57577_TGAC_v2_gene18594 0.5kb downstream 0.5kb downstream 1597 true Tp57577_TGAC_v2_LG1: 13461506-13463102 Trifolium pratense
Tp57577_TGAC_v2_gene18594 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 13462603-13463102 Trifolium pratense
Tp57577_TGAC_v2_gene18594 1.0kb upstream 1.0kb upstream 2097 true Tp57577_TGAC_v2_LG1: 13460506-13462602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 13460506-13461505 Trifolium pratense
Tp57577_TGAC_v2_gene18594 1.0kb downstream 1.0kb downstream 2097 true Tp57577_TGAC_v2_LG1: 13461506-13463602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 13462603-13463602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 2.0kb upstream 2.0kb upstream 3097 true Tp57577_TGAC_v2_LG1: 13459506-13462602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 13459506-13461505 Trifolium pratense
Tp57577_TGAC_v2_gene18594 2.0kb downstream 2.0kb downstream 3097 true Tp57577_TGAC_v2_LG1: 13461506-13464602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 13462603-13464602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 5.0kb upstream 5.0kb upstream 6097 true Tp57577_TGAC_v2_LG1: 13456506-13462602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 13456506-13461505 Trifolium pratense
Tp57577_TGAC_v2_gene18594 5.0kb downstream 5.0kb downstream 6097 true Tp57577_TGAC_v2_LG1: 13461506-13467602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 13462603-13467602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 10.0kb upstream 10.0kb upstream 11097 true Tp57577_TGAC_v2_LG1: 13451506-13462602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 13451506-13461505 Trifolium pratense
Tp57577_TGAC_v2_gene18594 10.0kb downstream 10.0kb downstream 11097 true Tp57577_TGAC_v2_LG1: 13461506-13472602 Trifolium pratense
Tp57577_TGAC_v2_gene18594 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 13462603-13472602 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122289900 5265 Fabidae View MSA
124051137 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain