Gene : Tp57577_TGAC_v2_gene15155 T. pratense v2
Defline:  (1 of 106) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  8
Name:  ? Tp57577_TGAC_v2_gene15155 Secondary Identifier:  ? PAC:35982197
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene15155 0.5kb upstream 0.5kb upstream 2653 true Tp57577_TGAC_v2_scaf_571: 130483-133135 Trifolium pratense
Tp57577_TGAC_v2_gene15155 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_571: 132636-133135 Trifolium pratense
Tp57577_TGAC_v2_gene15155 0.5kb downstream 0.5kb downstream 2653 true Tp57577_TGAC_v2_scaf_571: 129983-132635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_571: 129983-130482 Trifolium pratense
Tp57577_TGAC_v2_gene15155 1.0kb upstream 1.0kb upstream 3153 true Tp57577_TGAC_v2_scaf_571: 130483-133635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_571: 132636-133635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 1.0kb downstream 1.0kb downstream 3153 true Tp57577_TGAC_v2_scaf_571: 129483-132635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_571: 129483-130482 Trifolium pratense
Tp57577_TGAC_v2_gene15155 2.0kb upstream 2.0kb upstream 4153 true Tp57577_TGAC_v2_scaf_571: 130483-134635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_571: 132636-134635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 2.0kb downstream 2.0kb downstream 4153 true Tp57577_TGAC_v2_scaf_571: 128483-132635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_571: 128483-130482 Trifolium pratense
Tp57577_TGAC_v2_gene15155 5.0kb upstream 5.0kb upstream 7153 true Tp57577_TGAC_v2_scaf_571: 130483-137635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_571: 132636-137635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 5.0kb downstream 5.0kb downstream 7153 true Tp57577_TGAC_v2_scaf_571: 125483-132635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_571: 125483-130482 Trifolium pratense
Tp57577_TGAC_v2_gene15155 10.0kb upstream 10.0kb upstream 12153 true Tp57577_TGAC_v2_scaf_571: 130483-142635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_571: 132636-142635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 10.0kb downstream 10.0kb downstream 12153 true Tp57577_TGAC_v2_scaf_571: 120483-132635 Trifolium pratense
Tp57577_TGAC_v2_gene15155 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_571: 120483-130482 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029860 5273 Angiosperm View MSA
122314921 5265 Fabidae View MSA
124071412 5270 Rosid View MSA
123753670 5271 Pentapetalae View MSA
122775191 5272 Eudicot View MSA
121350456 5274 Embryophyte View MSA
123381742 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain