Gene : Tp57577_TGAC_v2_gene17429 T. pratense v2
Defline:  (1 of 3) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  22
Name:  ? Tp57577_TGAC_v2_gene17429 Secondary Identifier:  ? PAC:35966690
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense TRNA-CHARGING-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene17429 0.5kb upstream 0.5kb upstream 12563 true Tp57577_TGAC_v2_scaf_229: 151993-164555 Trifolium pratense
Tp57577_TGAC_v2_gene17429 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_229: 164056-164555 Trifolium pratense
Tp57577_TGAC_v2_gene17429 0.5kb downstream 0.5kb downstream 12563 true Tp57577_TGAC_v2_scaf_229: 151493-164055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_229: 151493-151992 Trifolium pratense
Tp57577_TGAC_v2_gene17429 1.0kb upstream 1.0kb upstream 13063 true Tp57577_TGAC_v2_scaf_229: 151993-165055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_229: 164056-165055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 1.0kb downstream 1.0kb downstream 13063 true Tp57577_TGAC_v2_scaf_229: 150993-164055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_229: 150993-151992 Trifolium pratense
Tp57577_TGAC_v2_gene17429 2.0kb upstream 2.0kb upstream 14063 true Tp57577_TGAC_v2_scaf_229: 151993-166055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_229: 164056-166055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 2.0kb downstream 2.0kb downstream 14063 true Tp57577_TGAC_v2_scaf_229: 149993-164055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_229: 149993-151992 Trifolium pratense
Tp57577_TGAC_v2_gene17429 5.0kb upstream 5.0kb upstream 17063 true Tp57577_TGAC_v2_scaf_229: 151993-169055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_229: 164056-169055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 5.0kb downstream 5.0kb downstream 17063 true Tp57577_TGAC_v2_scaf_229: 146993-164055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_229: 146993-151992 Trifolium pratense
Tp57577_TGAC_v2_gene17429 10.0kb upstream 10.0kb upstream 22063 true Tp57577_TGAC_v2_scaf_229: 151993-174055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_229: 164056-174055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 10.0kb downstream 10.0kb downstream 22063 true Tp57577_TGAC_v2_scaf_229: 141993-164055 Trifolium pratense
Tp57577_TGAC_v2_gene17429 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_229: 141993-151992 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307765 5265 Fabidae View MSA
124066992 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain