Gene : Tp57577_TGAC_v2_gene12883 T. pratense v2
Defline:  (1 of 3) PTHR11751:SF380 - 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2-RELATED Genomic Order:  421
Name:  ? Tp57577_TGAC_v2_gene12883 Secondary Identifier:  ? PAC:35987336
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense ETHYL-PWY Trifolium pratense pathologic  
Tpratense PWY-7270 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene12883 0.5kb upstream 0.5kb upstream 3239 true Tp57577_TGAC_v2_LG3: 3208419-3211657 Trifolium pratense
Tp57577_TGAC_v2_gene12883 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 3211158-3211657 Trifolium pratense
Tp57577_TGAC_v2_gene12883 0.5kb downstream 0.5kb downstream 3239 true Tp57577_TGAC_v2_LG3: 3207919-3211157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 3207919-3208418 Trifolium pratense
Tp57577_TGAC_v2_gene12883 1.0kb upstream 1.0kb upstream 3739 true Tp57577_TGAC_v2_LG3: 3208419-3212157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 3211158-3212157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 1.0kb downstream 1.0kb downstream 3739 true Tp57577_TGAC_v2_LG3: 3207419-3211157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 3207419-3208418 Trifolium pratense
Tp57577_TGAC_v2_gene12883 2.0kb upstream 2.0kb upstream 4739 true Tp57577_TGAC_v2_LG3: 3208419-3213157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 3211158-3213157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 2.0kb downstream 2.0kb downstream 4739 true Tp57577_TGAC_v2_LG3: 3206419-3211157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 3206419-3208418 Trifolium pratense
Tp57577_TGAC_v2_gene12883 5.0kb upstream 5.0kb upstream 7739 true Tp57577_TGAC_v2_LG3: 3208419-3216157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 3211158-3216157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 5.0kb downstream 5.0kb downstream 7739 true Tp57577_TGAC_v2_LG3: 3203419-3211157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 3203419-3208418 Trifolium pratense
Tp57577_TGAC_v2_gene12883 10.0kb upstream 10.0kb upstream 12739 true Tp57577_TGAC_v2_LG3: 3208419-3221157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 3211158-3221157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 10.0kb downstream 10.0kb downstream 12739 true Tp57577_TGAC_v2_LG3: 3198419-3211157 Trifolium pratense
Tp57577_TGAC_v2_gene12883 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 3198419-3208418 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299768 5265 Fabidae View MSA
124064739 5270 Rosid View MSA
123742797 5271 Pentapetalae View MSA
122787155 5272 Eudicot View MSA
122050094 5273 Angiosperm View MSA
121311735 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain