Gene : Tp57577_TGAC_v2_gene12789 T. pratense v2
Defline:  (1 of 2) PTHR11062:SF81 - BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED Genomic Order:  286
Name:  ? Tp57577_TGAC_v2_gene12789 Secondary Identifier:  ? PAC:35988721
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5980 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene12789 0.5kb upstream 0.5kb upstream 4458 true Tp57577_TGAC_v2_LG3: 2214346-2218803 Trifolium pratense
Tp57577_TGAC_v2_gene12789 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 2218304-2218803 Trifolium pratense
Tp57577_TGAC_v2_gene12789 0.5kb downstream 0.5kb downstream 4458 true Tp57577_TGAC_v2_LG3: 2213846-2218303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 2213846-2214345 Trifolium pratense
Tp57577_TGAC_v2_gene12789 1.0kb upstream 1.0kb upstream 4958 true Tp57577_TGAC_v2_LG3: 2214346-2219303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 2218304-2219303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 1.0kb downstream 1.0kb downstream 4958 true Tp57577_TGAC_v2_LG3: 2213346-2218303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 2213346-2214345 Trifolium pratense
Tp57577_TGAC_v2_gene12789 2.0kb upstream 2.0kb upstream 5958 true Tp57577_TGAC_v2_LG3: 2214346-2220303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 2218304-2220303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 2.0kb downstream 2.0kb downstream 5958 true Tp57577_TGAC_v2_LG3: 2212346-2218303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 2212346-2214345 Trifolium pratense
Tp57577_TGAC_v2_gene12789 5.0kb upstream 5.0kb upstream 8958 true Tp57577_TGAC_v2_LG3: 2214346-2223303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 2218304-2223303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 5.0kb downstream 5.0kb downstream 8958 true Tp57577_TGAC_v2_LG3: 2209346-2218303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 2209346-2214345 Trifolium pratense
Tp57577_TGAC_v2_gene12789 10.0kb upstream 10.0kb upstream 13958 true Tp57577_TGAC_v2_LG3: 2214346-2228303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 2218304-2228303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 10.0kb downstream 10.0kb downstream 13958 true Tp57577_TGAC_v2_LG3: 2204346-2218303 Trifolium pratense
Tp57577_TGAC_v2_gene12789 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 2204346-2214345 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301284 5265 Fabidae View MSA
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain