Gene : Tp57577_TGAC_v2_gene29107 T. pratense v2
Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  9
Name:  ? Tp57577_TGAC_v2_gene29107 Secondary Identifier:  ? PAC:35952213
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1269 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene29107 0.5kb upstream 0.5kb upstream 7818 true Tp57577_TGAC_v2_scaf_825: 80346-88163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_825: 80346-80845 Trifolium pratense
Tp57577_TGAC_v2_gene29107 0.5kb downstream 0.5kb downstream 7818 true Tp57577_TGAC_v2_scaf_825: 80846-88663 Trifolium pratense
Tp57577_TGAC_v2_gene29107 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_825: 88164-88663 Trifolium pratense
Tp57577_TGAC_v2_gene29107 1.0kb upstream 1.0kb upstream 8318 true Tp57577_TGAC_v2_scaf_825: 79846-88163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_825: 79846-80845 Trifolium pratense
Tp57577_TGAC_v2_gene29107 1.0kb downstream 1.0kb downstream 8318 true Tp57577_TGAC_v2_scaf_825: 80846-89163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_825: 88164-89163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 2.0kb upstream 2.0kb upstream 9318 true Tp57577_TGAC_v2_scaf_825: 78846-88163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_825: 78846-80845 Trifolium pratense
Tp57577_TGAC_v2_gene29107 2.0kb downstream 2.0kb downstream 9318 true Tp57577_TGAC_v2_scaf_825: 80846-90163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_825: 88164-90163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 5.0kb upstream 5.0kb upstream 12318 true Tp57577_TGAC_v2_scaf_825: 75846-88163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_825: 75846-80845 Trifolium pratense
Tp57577_TGAC_v2_gene29107 5.0kb downstream 5.0kb downstream 12318 true Tp57577_TGAC_v2_scaf_825: 80846-93163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_825: 88164-93163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 10.0kb upstream 10.0kb upstream 17318 true Tp57577_TGAC_v2_scaf_825: 70846-88163 Trifolium pratense
Tp57577_TGAC_v2_gene29107 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_825: 70846-80845 Trifolium pratense
Tp57577_TGAC_v2_gene29107 10.0kb downstream 10.0kb downstream 14160 true Tp57577_TGAC_v2_scaf_825: 80846-95005 Trifolium pratense
Tp57577_TGAC_v2_gene29107 10.0kb downstream 10.0kb downstream 6842 false Tp57577_TGAC_v2_scaf_825: 88164-95005 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307124 5265 Fabidae View MSA
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain