Gene : Tp57577_TGAC_v2_gene25842 T. pratense v2
Defline:  (1 of 96) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  2060
Name:  ? Tp57577_TGAC_v2_gene25842 Secondary Identifier:  ? PAC:35987945
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene25842 0.5kb upstream 0.5kb upstream 2898 true Tp57577_TGAC_v2_LG3: 16895854-16898751 Trifolium pratense
Tp57577_TGAC_v2_gene25842 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 16898252-16898751 Trifolium pratense
Tp57577_TGAC_v2_gene25842 0.5kb downstream 0.5kb downstream 2898 true Tp57577_TGAC_v2_LG3: 16895354-16898251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 16895354-16895853 Trifolium pratense
Tp57577_TGAC_v2_gene25842 1.0kb upstream 1.0kb upstream 3398 true Tp57577_TGAC_v2_LG3: 16895854-16899251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 16898252-16899251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 1.0kb downstream 1.0kb downstream 3398 true Tp57577_TGAC_v2_LG3: 16894854-16898251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 16894854-16895853 Trifolium pratense
Tp57577_TGAC_v2_gene25842 2.0kb upstream 2.0kb upstream 4398 true Tp57577_TGAC_v2_LG3: 16895854-16900251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 16898252-16900251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 2.0kb downstream 2.0kb downstream 4398 true Tp57577_TGAC_v2_LG3: 16893854-16898251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 16893854-16895853 Trifolium pratense
Tp57577_TGAC_v2_gene25842 5.0kb upstream 5.0kb upstream 7398 true Tp57577_TGAC_v2_LG3: 16895854-16903251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 16898252-16903251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 5.0kb downstream 5.0kb downstream 7398 true Tp57577_TGAC_v2_LG3: 16890854-16898251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 16890854-16895853 Trifolium pratense
Tp57577_TGAC_v2_gene25842 10.0kb upstream 10.0kb upstream 12398 true Tp57577_TGAC_v2_LG3: 16895854-16908251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 16898252-16908251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 10.0kb downstream 10.0kb downstream 12398 true Tp57577_TGAC_v2_LG3: 16885854-16898251 Trifolium pratense
Tp57577_TGAC_v2_gene25842 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 16885854-16895853 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314178 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain