Gene : Tp57577_TGAC_v2_gene851 T. pratense v2
Defline:  (1 of 5) PF00078//PF03372 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) Genomic Order:  2
Name:  ? Tp57577_TGAC_v2_gene851 Secondary Identifier:  ? PAC:35967994
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene851 0.5kb upstream 0.5kb upstream 2143 true Tp57577_TGAC_v2_scaf_2243: 2236-4378 Trifolium pratense
Tp57577_TGAC_v2_gene851 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_2243: 2236-2735 Trifolium pratense
Tp57577_TGAC_v2_gene851 0.5kb downstream 0.5kb downstream 2143 true Tp57577_TGAC_v2_scaf_2243: 2736-4878 Trifolium pratense
Tp57577_TGAC_v2_gene851 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_2243: 4379-4878 Trifolium pratense
Tp57577_TGAC_v2_gene851 1.0kb upstream 1.0kb upstream 2643 true Tp57577_TGAC_v2_scaf_2243: 1736-4378 Trifolium pratense
Tp57577_TGAC_v2_gene851 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_2243: 1736-2735 Trifolium pratense
Tp57577_TGAC_v2_gene851 1.0kb downstream 1.0kb downstream 2643 true Tp57577_TGAC_v2_scaf_2243: 2736-5378 Trifolium pratense
Tp57577_TGAC_v2_gene851 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_2243: 4379-5378 Trifolium pratense
Tp57577_TGAC_v2_gene851 2.0kb upstream 2.0kb upstream 3643 true Tp57577_TGAC_v2_scaf_2243: 736-4378 Trifolium pratense
Tp57577_TGAC_v2_gene851 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_2243: 736-2735 Trifolium pratense
Tp57577_TGAC_v2_gene851 2.0kb downstream 2.0kb downstream 3643 true Tp57577_TGAC_v2_scaf_2243: 2736-6378 Trifolium pratense
Tp57577_TGAC_v2_gene851 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_2243: 4379-6378 Trifolium pratense
Tp57577_TGAC_v2_gene851 5.0kb upstream 5.0kb upstream 4378 true Tp57577_TGAC_v2_scaf_2243: 1-4378 Trifolium pratense
Tp57577_TGAC_v2_gene851 5.0kb upstream 5.0kb upstream 2735 false Tp57577_TGAC_v2_scaf_2243: 1-2735 Trifolium pratense
Tp57577_TGAC_v2_gene851 5.0kb downstream 5.0kb downstream 4436 true Tp57577_TGAC_v2_scaf_2243: 2736-7171 Trifolium pratense
Tp57577_TGAC_v2_gene851 5.0kb downstream 5.0kb downstream 2793 false Tp57577_TGAC_v2_scaf_2243: 4379-7171 Trifolium pratense
Tp57577_TGAC_v2_gene851 10.0kb upstream 10.0kb upstream 4378 true Tp57577_TGAC_v2_scaf_2243: 1-4378 Trifolium pratense
Tp57577_TGAC_v2_gene851 10.0kb upstream 10.0kb upstream 2735 false Tp57577_TGAC_v2_scaf_2243: 1-2735 Trifolium pratense
Tp57577_TGAC_v2_gene851 10.0kb downstream 10.0kb downstream 4436 true Tp57577_TGAC_v2_scaf_2243: 2736-7171 Trifolium pratense
Tp57577_TGAC_v2_gene851 10.0kb downstream 10.0kb downstream 2793 false Tp57577_TGAC_v2_scaf_2243: 4379-7171 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315345 5265 Fabidae View MSA
124074258 5270 Rosid View MSA
123753554 5271 Pentapetalae View MSA
122797941 5272 Eudicot View MSA
122051690 5273 Angiosperm View MSA
121351675 5274 Embryophyte View MSA
123428354 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain