Gene : Tp57577_TGAC_v2_gene24008 T. pratense v2
Defline:  (1 of 1) K18010 - 7-hydroxymethyl chlorophyll a reductase (HCAR) Genomic Order:  1448
Name:  ? Tp57577_TGAC_v2_gene24008 Secondary Identifier:  ? PAC:35981175
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5068 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene24008 0.5kb upstream 0.5kb upstream 8124 true Tp57577_TGAC_v2_LG1: 12021927-12030050 Trifolium pratense
Tp57577_TGAC_v2_gene24008 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 12029551-12030050 Trifolium pratense
Tp57577_TGAC_v2_gene24008 0.5kb downstream 0.5kb downstream 8124 true Tp57577_TGAC_v2_LG1: 12021427-12029550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 12021427-12021926 Trifolium pratense
Tp57577_TGAC_v2_gene24008 1.0kb upstream 1.0kb upstream 8624 true Tp57577_TGAC_v2_LG1: 12021927-12030550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 12029551-12030550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 1.0kb downstream 1.0kb downstream 8624 true Tp57577_TGAC_v2_LG1: 12020927-12029550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 12020927-12021926 Trifolium pratense
Tp57577_TGAC_v2_gene24008 2.0kb upstream 2.0kb upstream 9624 true Tp57577_TGAC_v2_LG1: 12021927-12031550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 12029551-12031550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 2.0kb downstream 2.0kb downstream 9624 true Tp57577_TGAC_v2_LG1: 12019927-12029550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 12019927-12021926 Trifolium pratense
Tp57577_TGAC_v2_gene24008 5.0kb upstream 5.0kb upstream 12624 true Tp57577_TGAC_v2_LG1: 12021927-12034550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 12029551-12034550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 5.0kb downstream 5.0kb downstream 12624 true Tp57577_TGAC_v2_LG1: 12016927-12029550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 12016927-12021926 Trifolium pratense
Tp57577_TGAC_v2_gene24008 10.0kb upstream 10.0kb upstream 17624 true Tp57577_TGAC_v2_LG1: 12021927-12039550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 12029551-12039550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 10.0kb downstream 10.0kb downstream 17624 true Tp57577_TGAC_v2_LG1: 12011927-12029550 Trifolium pratense
Tp57577_TGAC_v2_gene24008 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 12011927-12021926 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308112 5265 Fabidae View MSA
124061681 5270 Rosid View MSA
123745545 5271 Pentapetalae View MSA
122786931 5272 Eudicot View MSA
122042244 5273 Angiosperm View MSA
121347616 5274 Embryophyte View MSA
123428400 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain