Gene : Tp57577_TGAC_v2_gene16219 T. pratense v2
Defline:  (1 of 1) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  1963
Name:  ? Tp57577_TGAC_v2_gene16219 Secondary Identifier:  ? PAC:35990527
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-2541 Trifolium pratense pathologic  
Tpratense PWY-5670 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene16219 0.5kb upstream 0.5kb upstream 7366 true Tp57577_TGAC_v2_LG3: 15937147-15944512 Trifolium pratense
Tp57577_TGAC_v2_gene16219 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 15944013-15944512 Trifolium pratense
Tp57577_TGAC_v2_gene16219 0.5kb downstream 0.5kb downstream 7366 true Tp57577_TGAC_v2_LG3: 15936647-15944012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 15936647-15937146 Trifolium pratense
Tp57577_TGAC_v2_gene16219 1.0kb upstream 1.0kb upstream 7866 true Tp57577_TGAC_v2_LG3: 15937147-15945012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 15944013-15945012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 1.0kb downstream 1.0kb downstream 7866 true Tp57577_TGAC_v2_LG3: 15936147-15944012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 15936147-15937146 Trifolium pratense
Tp57577_TGAC_v2_gene16219 2.0kb upstream 2.0kb upstream 8866 true Tp57577_TGAC_v2_LG3: 15937147-15946012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 15944013-15946012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 2.0kb downstream 2.0kb downstream 8866 true Tp57577_TGAC_v2_LG3: 15935147-15944012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 15935147-15937146 Trifolium pratense
Tp57577_TGAC_v2_gene16219 5.0kb upstream 5.0kb upstream 11866 true Tp57577_TGAC_v2_LG3: 15937147-15949012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 15944013-15949012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 5.0kb downstream 5.0kb downstream 11866 true Tp57577_TGAC_v2_LG3: 15932147-15944012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 15932147-15937146 Trifolium pratense
Tp57577_TGAC_v2_gene16219 10.0kb upstream 10.0kb upstream 16866 true Tp57577_TGAC_v2_LG3: 15937147-15954012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 15944013-15954012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 10.0kb downstream 10.0kb downstream 16866 true Tp57577_TGAC_v2_LG3: 15927147-15944012 Trifolium pratense
Tp57577_TGAC_v2_gene16219 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 15927147-15937146 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307397 5265 Fabidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain