Gene : Tp57577_TGAC_v2_gene17079 T. pratense v2
Defline:  (1 of 1) PTHR11771:SF60 - LIPOXYGENASE 6, CHLOROPLASTIC Genomic Order:  1173
Name:  ? Tp57577_TGAC_v2_gene17079 Secondary Identifier:  ? PAC:35989157
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5409 Trifolium pratense pathologic  
Tpratense PWY-5410 Trifolium pratense pathologic  
Tpratense PWY-735 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene17079 0.5kb upstream 0.5kb upstream 5445 true Tp57577_TGAC_v2_LG3: 9005172-9010616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 9005172-9005671 Trifolium pratense
Tp57577_TGAC_v2_gene17079 0.5kb downstream 0.5kb downstream 5445 true Tp57577_TGAC_v2_LG3: 9005672-9011116 Trifolium pratense
Tp57577_TGAC_v2_gene17079 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 9010617-9011116 Trifolium pratense
Tp57577_TGAC_v2_gene17079 1.0kb upstream 1.0kb upstream 5945 true Tp57577_TGAC_v2_LG3: 9004672-9010616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 9004672-9005671 Trifolium pratense
Tp57577_TGAC_v2_gene17079 1.0kb downstream 1.0kb downstream 5945 true Tp57577_TGAC_v2_LG3: 9005672-9011616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 9010617-9011616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 2.0kb upstream 2.0kb upstream 6945 true Tp57577_TGAC_v2_LG3: 9003672-9010616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 9003672-9005671 Trifolium pratense
Tp57577_TGAC_v2_gene17079 2.0kb downstream 2.0kb downstream 6945 true Tp57577_TGAC_v2_LG3: 9005672-9012616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 9010617-9012616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 5.0kb upstream 5.0kb upstream 9945 true Tp57577_TGAC_v2_LG3: 9000672-9010616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 9000672-9005671 Trifolium pratense
Tp57577_TGAC_v2_gene17079 5.0kb downstream 5.0kb downstream 9945 true Tp57577_TGAC_v2_LG3: 9005672-9015616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 9010617-9015616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 10.0kb upstream 10.0kb upstream 14945 true Tp57577_TGAC_v2_LG3: 8995672-9010616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 8995672-9005671 Trifolium pratense
Tp57577_TGAC_v2_gene17079 10.0kb downstream 10.0kb downstream 14945 true Tp57577_TGAC_v2_LG3: 9005672-9020616 Trifolium pratense
Tp57577_TGAC_v2_gene17079 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 9010617-9020616 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299758 5265 Fabidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain