Gene : Tp57577_TGAC_v2_gene39179 T. pratense v2
Defline:  (1 of 1) PTHR23012//PTHR23012:SF57 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  2119
Name:  ? Tp57577_TGAC_v2_gene39179 Secondary Identifier:  ? PAC:35988267
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7511 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene39179 0.5kb upstream 0.5kb upstream 4129 true Tp57577_TGAC_v2_LG3: 17533984-17538112 Trifolium pratense
Tp57577_TGAC_v2_gene39179 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 17537613-17538112 Trifolium pratense
Tp57577_TGAC_v2_gene39179 0.5kb downstream 0.5kb downstream 4129 true Tp57577_TGAC_v2_LG3: 17533484-17537612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 17533484-17533983 Trifolium pratense
Tp57577_TGAC_v2_gene39179 1.0kb upstream 1.0kb upstream 4629 true Tp57577_TGAC_v2_LG3: 17533984-17538612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 17537613-17538612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 1.0kb downstream 1.0kb downstream 4629 true Tp57577_TGAC_v2_LG3: 17532984-17537612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 17532984-17533983 Trifolium pratense
Tp57577_TGAC_v2_gene39179 2.0kb upstream 2.0kb upstream 5629 true Tp57577_TGAC_v2_LG3: 17533984-17539612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 17537613-17539612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 2.0kb downstream 2.0kb downstream 5629 true Tp57577_TGAC_v2_LG3: 17531984-17537612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 17531984-17533983 Trifolium pratense
Tp57577_TGAC_v2_gene39179 5.0kb upstream 5.0kb upstream 8629 true Tp57577_TGAC_v2_LG3: 17533984-17542612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 17537613-17542612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 5.0kb downstream 5.0kb downstream 8629 true Tp57577_TGAC_v2_LG3: 17528984-17537612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 17528984-17533983 Trifolium pratense
Tp57577_TGAC_v2_gene39179 10.0kb upstream 10.0kb upstream 13629 true Tp57577_TGAC_v2_LG3: 17533984-17547612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 17537613-17547612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 10.0kb downstream 10.0kb downstream 13629 true Tp57577_TGAC_v2_LG3: 17523984-17537612 Trifolium pratense
Tp57577_TGAC_v2_gene39179 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 17523984-17533983 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313132 5265 Fabidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain