Gene : Tp57577_TGAC_v2_gene29193 T. pratense v2
Defline:  (1 of 106) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2010
Name:  ? Tp57577_TGAC_v2_gene29193 Secondary Identifier:  ? PAC:35990116
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene29193 0.5kb upstream 0.5kb upstream 5378 true Tp57577_TGAC_v2_LG3: 16433905-16439282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 16433905-16434404 Trifolium pratense
Tp57577_TGAC_v2_gene29193 0.5kb downstream 0.5kb downstream 5378 true Tp57577_TGAC_v2_LG3: 16434405-16439782 Trifolium pratense
Tp57577_TGAC_v2_gene29193 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 16439283-16439782 Trifolium pratense
Tp57577_TGAC_v2_gene29193 1.0kb upstream 1.0kb upstream 5878 true Tp57577_TGAC_v2_LG3: 16433405-16439282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 16433405-16434404 Trifolium pratense
Tp57577_TGAC_v2_gene29193 1.0kb downstream 1.0kb downstream 5878 true Tp57577_TGAC_v2_LG3: 16434405-16440282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 16439283-16440282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 2.0kb upstream 2.0kb upstream 6878 true Tp57577_TGAC_v2_LG3: 16432405-16439282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 16432405-16434404 Trifolium pratense
Tp57577_TGAC_v2_gene29193 2.0kb downstream 2.0kb downstream 6878 true Tp57577_TGAC_v2_LG3: 16434405-16441282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 16439283-16441282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 5.0kb upstream 5.0kb upstream 9878 true Tp57577_TGAC_v2_LG3: 16429405-16439282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 16429405-16434404 Trifolium pratense
Tp57577_TGAC_v2_gene29193 5.0kb downstream 5.0kb downstream 9878 true Tp57577_TGAC_v2_LG3: 16434405-16444282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 16439283-16444282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 10.0kb upstream 10.0kb upstream 14878 true Tp57577_TGAC_v2_LG3: 16424405-16439282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 16424405-16434404 Trifolium pratense
Tp57577_TGAC_v2_gene29193 10.0kb downstream 10.0kb downstream 14878 true Tp57577_TGAC_v2_LG3: 16434405-16449282 Trifolium pratense
Tp57577_TGAC_v2_gene29193 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 16439283-16449282 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029860 5273 Angiosperm View MSA
122314921 5265 Fabidae View MSA
124071412 5270 Rosid View MSA
123753670 5271 Pentapetalae View MSA
122775191 5272 Eudicot View MSA
121350456 5274 Embryophyte View MSA
123381742 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain