Gene : Tp57577_TGAC_v2_gene16892 T. pratense v2
Defline:  (1 of 1) PTHR11540:SF21 - MALATE DEHYDROGENASE, GLYOXYSOMAL Genomic Order:  10
Name:  ? Tp57577_TGAC_v2_gene16892 Secondary Identifier:  ? PAC:35977524
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense GLUCONEO-PWY Trifolium pratense pathologic  
Tpratense GLYOXYLATE-BYPASS Trifolium pratense pathologic  
Tpratense PWY-5464 Trifolium pratense pathologic  
Tpratense PWY-561 Trifolium pratense pathologic  
Tpratense PWY-5690 Trifolium pratense pathologic  
Tpratense PWY-7115 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene16892 0.5kb upstream 0.5kb upstream 3519 true Tp57577_TGAC_v2_scaf_259: 100107-103625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_259: 100107-100606 Trifolium pratense
Tp57577_TGAC_v2_gene16892 0.5kb downstream 0.5kb downstream 3519 true Tp57577_TGAC_v2_scaf_259: 100607-104125 Trifolium pratense
Tp57577_TGAC_v2_gene16892 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_259: 103626-104125 Trifolium pratense
Tp57577_TGAC_v2_gene16892 1.0kb upstream 1.0kb upstream 4019 true Tp57577_TGAC_v2_scaf_259: 99607-103625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_259: 99607-100606 Trifolium pratense
Tp57577_TGAC_v2_gene16892 1.0kb downstream 1.0kb downstream 4019 true Tp57577_TGAC_v2_scaf_259: 100607-104625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_259: 103626-104625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 2.0kb upstream 2.0kb upstream 5019 true Tp57577_TGAC_v2_scaf_259: 98607-103625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_259: 98607-100606 Trifolium pratense
Tp57577_TGAC_v2_gene16892 2.0kb downstream 2.0kb downstream 5019 true Tp57577_TGAC_v2_scaf_259: 100607-105625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_259: 103626-105625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 5.0kb upstream 5.0kb upstream 8019 true Tp57577_TGAC_v2_scaf_259: 95607-103625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_259: 95607-100606 Trifolium pratense
Tp57577_TGAC_v2_gene16892 5.0kb downstream 5.0kb downstream 8019 true Tp57577_TGAC_v2_scaf_259: 100607-108625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_259: 103626-108625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 10.0kb upstream 10.0kb upstream 13019 true Tp57577_TGAC_v2_scaf_259: 90607-103625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_259: 90607-100606 Trifolium pratense
Tp57577_TGAC_v2_gene16892 10.0kb downstream 10.0kb downstream 13019 true Tp57577_TGAC_v2_scaf_259: 100607-113625 Trifolium pratense
Tp57577_TGAC_v2_gene16892 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_259: 103626-113625 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313107 5265 Fabidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain