Gene : Tp57577_TGAC_v2_gene5144 T. pratense v2
Defline:  (1 of 3) K01184 - polygalacturonase (E3.2.1.15) Genomic Order:  2871
Name:  ? Tp57577_TGAC_v2_gene5144 Secondary Identifier:  ? PAC:35988644
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene5144 0.5kb upstream 0.5kb upstream 5789 true Tp57577_TGAC_v2_LG3: 24255734-24261522 Trifolium pratense
Tp57577_TGAC_v2_gene5144 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 24261023-24261522 Trifolium pratense
Tp57577_TGAC_v2_gene5144 0.5kb downstream 0.5kb downstream 5789 true Tp57577_TGAC_v2_LG3: 24255234-24261022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 24255234-24255733 Trifolium pratense
Tp57577_TGAC_v2_gene5144 1.0kb upstream 1.0kb upstream 6289 true Tp57577_TGAC_v2_LG3: 24255734-24262022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 24261023-24262022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 1.0kb downstream 1.0kb downstream 6289 true Tp57577_TGAC_v2_LG3: 24254734-24261022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 24254734-24255733 Trifolium pratense
Tp57577_TGAC_v2_gene5144 2.0kb upstream 2.0kb upstream 7289 true Tp57577_TGAC_v2_LG3: 24255734-24263022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 24261023-24263022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 2.0kb downstream 2.0kb downstream 7289 true Tp57577_TGAC_v2_LG3: 24253734-24261022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 24253734-24255733 Trifolium pratense
Tp57577_TGAC_v2_gene5144 5.0kb upstream 5.0kb upstream 10289 true Tp57577_TGAC_v2_LG3: 24255734-24266022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 24261023-24266022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 5.0kb downstream 5.0kb downstream 10289 true Tp57577_TGAC_v2_LG3: 24250734-24261022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 24250734-24255733 Trifolium pratense
Tp57577_TGAC_v2_gene5144 10.0kb upstream 10.0kb upstream 15289 true Tp57577_TGAC_v2_LG3: 24255734-24271022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 24261023-24271022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 10.0kb downstream 10.0kb downstream 15289 true Tp57577_TGAC_v2_LG3: 24245734-24261022 Trifolium pratense
Tp57577_TGAC_v2_gene5144 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 24245734-24255733 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314468 5265 Fabidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain