Gene : Tp57577_TGAC_v2_gene5105 T. pratense v2
Defline:  (1 of 1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  2917
Name:  ? Tp57577_TGAC_v2_gene5105 Secondary Identifier:  ? PAC:35989760
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5120 Trifolium pratense pathologic  
Tpratense PWY-5910 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene5105 0.5kb upstream 0.5kb upstream 3250 true Tp57577_TGAC_v2_LG3: 24584443-24587692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 24584443-24584942 Trifolium pratense
Tp57577_TGAC_v2_gene5105 0.5kb downstream 0.5kb downstream 3250 true Tp57577_TGAC_v2_LG3: 24584943-24588192 Trifolium pratense
Tp57577_TGAC_v2_gene5105 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 24587693-24588192 Trifolium pratense
Tp57577_TGAC_v2_gene5105 1.0kb upstream 1.0kb upstream 3750 true Tp57577_TGAC_v2_LG3: 24583943-24587692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 24583943-24584942 Trifolium pratense
Tp57577_TGAC_v2_gene5105 1.0kb downstream 1.0kb downstream 3750 true Tp57577_TGAC_v2_LG3: 24584943-24588692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 24587693-24588692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 2.0kb upstream 2.0kb upstream 4750 true Tp57577_TGAC_v2_LG3: 24582943-24587692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 24582943-24584942 Trifolium pratense
Tp57577_TGAC_v2_gene5105 2.0kb downstream 2.0kb downstream 4750 true Tp57577_TGAC_v2_LG3: 24584943-24589692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 24587693-24589692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 5.0kb upstream 5.0kb upstream 7750 true Tp57577_TGAC_v2_LG3: 24579943-24587692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 24579943-24584942 Trifolium pratense
Tp57577_TGAC_v2_gene5105 5.0kb downstream 5.0kb downstream 7750 true Tp57577_TGAC_v2_LG3: 24584943-24592692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 24587693-24592692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 10.0kb upstream 10.0kb upstream 12750 true Tp57577_TGAC_v2_LG3: 24574943-24587692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 24574943-24584942 Trifolium pratense
Tp57577_TGAC_v2_gene5105 10.0kb downstream 10.0kb downstream 12750 true Tp57577_TGAC_v2_LG3: 24584943-24597692 Trifolium pratense
Tp57577_TGAC_v2_gene5105 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 24587693-24597692 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302635 5265 Fabidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain