Gene : Tp57577_TGAC_v2_gene3045 T. pratense v2
Defline:  (1 of 9) 1.10.3.9 - Photosystem II Genomic Order:  2552
Name:  ? Tp57577_TGAC_v2_gene3045 Secondary Identifier:  ? PAC:35979196
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PHOTOALL-PWY Trifolium pratense pathologic  
Tpratense PWY-101 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene3045 0.5kb upstream 0.5kb upstream 2244 true Tp57577_TGAC_v2_LG1: 21577940-21580183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 21577940-21578439 Trifolium pratense
Tp57577_TGAC_v2_gene3045 0.5kb downstream 0.5kb downstream 2244 true Tp57577_TGAC_v2_LG1: 21578440-21580683 Trifolium pratense
Tp57577_TGAC_v2_gene3045 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 21580184-21580683 Trifolium pratense
Tp57577_TGAC_v2_gene3045 1.0kb upstream 1.0kb upstream 2744 true Tp57577_TGAC_v2_LG1: 21577440-21580183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 21577440-21578439 Trifolium pratense
Tp57577_TGAC_v2_gene3045 1.0kb downstream 1.0kb downstream 2744 true Tp57577_TGAC_v2_LG1: 21578440-21581183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 21580184-21581183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 2.0kb upstream 2.0kb upstream 3744 true Tp57577_TGAC_v2_LG1: 21576440-21580183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 21576440-21578439 Trifolium pratense
Tp57577_TGAC_v2_gene3045 2.0kb downstream 2.0kb downstream 3744 true Tp57577_TGAC_v2_LG1: 21578440-21582183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 21580184-21582183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 5.0kb upstream 5.0kb upstream 6744 true Tp57577_TGAC_v2_LG1: 21573440-21580183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 21573440-21578439 Trifolium pratense
Tp57577_TGAC_v2_gene3045 5.0kb downstream 5.0kb downstream 6744 true Tp57577_TGAC_v2_LG1: 21578440-21585183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 21580184-21585183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 10.0kb upstream 10.0kb upstream 11744 true Tp57577_TGAC_v2_LG1: 21568440-21580183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 21568440-21578439 Trifolium pratense
Tp57577_TGAC_v2_gene3045 10.0kb downstream 10.0kb downstream 11744 true Tp57577_TGAC_v2_LG1: 21578440-21590183 Trifolium pratense
Tp57577_TGAC_v2_gene3045 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 21580184-21590183 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122289180 5265 Fabidae View MSA
124074892 5270 Rosid View MSA
123753442 5271 Pentapetalae View MSA
122794783 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain