Gene : Tp57577_TGAC_v2_gene3090 T. pratense v2
Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  2538
Name:  ? Tp57577_TGAC_v2_gene3090 Secondary Identifier:  ? PAC:35978661
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene3090 0.5kb upstream 0.5kb upstream 3924 true Tp57577_TGAC_v2_LG1: 21514956-21518879 Trifolium pratense
Tp57577_TGAC_v2_gene3090 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 21518380-21518879 Trifolium pratense
Tp57577_TGAC_v2_gene3090 0.5kb downstream 0.5kb downstream 3924 true Tp57577_TGAC_v2_LG1: 21514456-21518379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 21514456-21514955 Trifolium pratense
Tp57577_TGAC_v2_gene3090 1.0kb upstream 1.0kb upstream 4424 true Tp57577_TGAC_v2_LG1: 21514956-21519379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 21518380-21519379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 1.0kb downstream 1.0kb downstream 4424 true Tp57577_TGAC_v2_LG1: 21513956-21518379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 21513956-21514955 Trifolium pratense
Tp57577_TGAC_v2_gene3090 2.0kb upstream 2.0kb upstream 5424 true Tp57577_TGAC_v2_LG1: 21514956-21520379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 21518380-21520379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 2.0kb downstream 2.0kb downstream 5424 true Tp57577_TGAC_v2_LG1: 21512956-21518379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 21512956-21514955 Trifolium pratense
Tp57577_TGAC_v2_gene3090 5.0kb upstream 5.0kb upstream 8424 true Tp57577_TGAC_v2_LG1: 21514956-21523379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 21518380-21523379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 5.0kb downstream 5.0kb downstream 8424 true Tp57577_TGAC_v2_LG1: 21509956-21518379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 21509956-21514955 Trifolium pratense
Tp57577_TGAC_v2_gene3090 10.0kb upstream 10.0kb upstream 13424 true Tp57577_TGAC_v2_LG1: 21514956-21528379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 21518380-21528379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 10.0kb downstream 10.0kb downstream 13424 true Tp57577_TGAC_v2_LG1: 21504956-21518379 Trifolium pratense
Tp57577_TGAC_v2_gene3090 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 21504956-21514955 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312422 5265 Fabidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain