Gene : Tp57577_TGAC_v2_gene3171 T. pratense v2
Defline:  (1 of 1) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Genomic Order:  2926
Name:  ? Tp57577_TGAC_v2_gene3171 Secondary Identifier:  ? PAC:35981217
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense TRNA-CHARGING-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene3171 0.5kb upstream 0.5kb upstream 4390 true Tp57577_TGAC_v2_LG1: 24595577-24599966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 24595577-24596076 Trifolium pratense
Tp57577_TGAC_v2_gene3171 0.5kb downstream 0.5kb downstream 4390 true Tp57577_TGAC_v2_LG1: 24596077-24600466 Trifolium pratense
Tp57577_TGAC_v2_gene3171 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 24599967-24600466 Trifolium pratense
Tp57577_TGAC_v2_gene3171 1.0kb upstream 1.0kb upstream 4890 true Tp57577_TGAC_v2_LG1: 24595077-24599966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 24595077-24596076 Trifolium pratense
Tp57577_TGAC_v2_gene3171 1.0kb downstream 1.0kb downstream 4890 true Tp57577_TGAC_v2_LG1: 24596077-24600966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 24599967-24600966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 2.0kb upstream 2.0kb upstream 5890 true Tp57577_TGAC_v2_LG1: 24594077-24599966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 24594077-24596076 Trifolium pratense
Tp57577_TGAC_v2_gene3171 2.0kb downstream 2.0kb downstream 5890 true Tp57577_TGAC_v2_LG1: 24596077-24601966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 24599967-24601966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 5.0kb upstream 5.0kb upstream 8890 true Tp57577_TGAC_v2_LG1: 24591077-24599966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 24591077-24596076 Trifolium pratense
Tp57577_TGAC_v2_gene3171 5.0kb downstream 5.0kb downstream 8890 true Tp57577_TGAC_v2_LG1: 24596077-24604966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 24599967-24604966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 10.0kb upstream 10.0kb upstream 13890 true Tp57577_TGAC_v2_LG1: 24586077-24599966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 24586077-24596076 Trifolium pratense
Tp57577_TGAC_v2_gene3171 10.0kb downstream 10.0kb downstream 13890 true Tp57577_TGAC_v2_LG1: 24596077-24609966 Trifolium pratense
Tp57577_TGAC_v2_gene3171 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 24599967-24609966 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122303941 5265 Fabidae View MSA
124061636 5270 Rosid View MSA
123736898 5271 Pentapetalae View MSA
122790717 5272 Eudicot View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain