Gene : Tp57577_TGAC_v2_gene3061 T. pratense v2
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  2569
Name:  ? Tp57577_TGAC_v2_gene3061 Secondary Identifier:  ? PAC:35980965
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense CHLOROPHYLL-SYN Trifolium pratense pathologic  
Tpratense HEME-BIOSYNTHESIS-II Trifolium pratense pathologic  
Tpratense PWY-5918 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene3061 0.5kb upstream 0.5kb upstream 6740 true Tp57577_TGAC_v2_LG1: 21671700-21678439 Trifolium pratense
Tp57577_TGAC_v2_gene3061 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 21677940-21678439 Trifolium pratense
Tp57577_TGAC_v2_gene3061 0.5kb downstream 0.5kb downstream 6740 true Tp57577_TGAC_v2_LG1: 21671200-21677939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 21671200-21671699 Trifolium pratense
Tp57577_TGAC_v2_gene3061 1.0kb upstream 1.0kb upstream 7240 true Tp57577_TGAC_v2_LG1: 21671700-21678939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 21677940-21678939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 1.0kb downstream 1.0kb downstream 7240 true Tp57577_TGAC_v2_LG1: 21670700-21677939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 21670700-21671699 Trifolium pratense
Tp57577_TGAC_v2_gene3061 2.0kb upstream 2.0kb upstream 8240 true Tp57577_TGAC_v2_LG1: 21671700-21679939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 21677940-21679939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 2.0kb downstream 2.0kb downstream 8240 true Tp57577_TGAC_v2_LG1: 21669700-21677939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 21669700-21671699 Trifolium pratense
Tp57577_TGAC_v2_gene3061 5.0kb upstream 5.0kb upstream 11240 true Tp57577_TGAC_v2_LG1: 21671700-21682939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 21677940-21682939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 5.0kb downstream 5.0kb downstream 11240 true Tp57577_TGAC_v2_LG1: 21666700-21677939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 21666700-21671699 Trifolium pratense
Tp57577_TGAC_v2_gene3061 10.0kb upstream 10.0kb upstream 16240 true Tp57577_TGAC_v2_LG1: 21671700-21687939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 21677940-21687939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 10.0kb downstream 10.0kb downstream 16240 true Tp57577_TGAC_v2_LG1: 21661700-21677939 Trifolium pratense
Tp57577_TGAC_v2_gene3061 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 21661700-21671699 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305457 5265 Fabidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain