Gene : Tp57577_TGAC_v2_gene38904 T. pratense v2
Defline:  (1 of 1) K16274 - E3 ubiquitin-protein ligase AIP2 [EC:6.3.2.19] (AIP2) Genomic Order:  2110
Name:  ? Tp57577_TGAC_v2_gene38904 Secondary Identifier:  ? PAC:35978761
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7511 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene38904 0.5kb upstream 0.5kb upstream 5444 true Tp57577_TGAC_v2_LG1: 17846097-17851540 Trifolium pratense
Tp57577_TGAC_v2_gene38904 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 17851041-17851540 Trifolium pratense
Tp57577_TGAC_v2_gene38904 0.5kb downstream 0.5kb downstream 5444 true Tp57577_TGAC_v2_LG1: 17845597-17851040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 17845597-17846096 Trifolium pratense
Tp57577_TGAC_v2_gene38904 1.0kb upstream 1.0kb upstream 5944 true Tp57577_TGAC_v2_LG1: 17846097-17852040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 17851041-17852040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 1.0kb downstream 1.0kb downstream 5944 true Tp57577_TGAC_v2_LG1: 17845097-17851040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 17845097-17846096 Trifolium pratense
Tp57577_TGAC_v2_gene38904 2.0kb upstream 2.0kb upstream 6944 true Tp57577_TGAC_v2_LG1: 17846097-17853040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 17851041-17853040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 2.0kb downstream 2.0kb downstream 6944 true Tp57577_TGAC_v2_LG1: 17844097-17851040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 17844097-17846096 Trifolium pratense
Tp57577_TGAC_v2_gene38904 5.0kb upstream 5.0kb upstream 9944 true Tp57577_TGAC_v2_LG1: 17846097-17856040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 17851041-17856040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 5.0kb downstream 5.0kb downstream 9944 true Tp57577_TGAC_v2_LG1: 17841097-17851040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 17841097-17846096 Trifolium pratense
Tp57577_TGAC_v2_gene38904 10.0kb upstream 10.0kb upstream 14944 true Tp57577_TGAC_v2_LG1: 17846097-17861040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 17851041-17861040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 10.0kb downstream 10.0kb downstream 14944 true Tp57577_TGAC_v2_LG1: 17836097-17851040 Trifolium pratense
Tp57577_TGAC_v2_gene38904 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 17836097-17846096 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026169 5273 Angiosperm View MSA
122312230 5265 Fabidae View MSA
124060743 5270 Rosid View MSA
123738156 5271 Pentapetalae View MSA
122787757 5272 Eudicot View MSA
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain