Gene : Tp57577_TGAC_v2_gene11134 T. pratense v2
Defline:  (1 of 2) 1.3.5.6 - 9,9'-di-cis-zeta-carotene desaturase / Zeta-carotene desaturase Genomic Order:  17
Name:  ? Tp57577_TGAC_v2_gene11134 Secondary Identifier:  ? PAC:35962801
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense CAROTENOID-PWY Trifolium pratense pathologic  
Tpratense PWY-6475 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene11134 0.5kb upstream 0.5kb upstream 1316 true Tp57577_TGAC_v2_scaf_450: 130956-132271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_450: 130956-131455 Trifolium pratense
Tp57577_TGAC_v2_gene11134 0.5kb downstream 0.5kb downstream 1316 true Tp57577_TGAC_v2_scaf_450: 131456-132771 Trifolium pratense
Tp57577_TGAC_v2_gene11134 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_450: 132272-132771 Trifolium pratense
Tp57577_TGAC_v2_gene11134 1.0kb upstream 1.0kb upstream 1816 true Tp57577_TGAC_v2_scaf_450: 130456-132271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_450: 130456-131455 Trifolium pratense
Tp57577_TGAC_v2_gene11134 1.0kb downstream 1.0kb downstream 1816 true Tp57577_TGAC_v2_scaf_450: 131456-133271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_450: 132272-133271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 2.0kb upstream 2.0kb upstream 2816 true Tp57577_TGAC_v2_scaf_450: 129456-132271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_450: 129456-131455 Trifolium pratense
Tp57577_TGAC_v2_gene11134 2.0kb downstream 2.0kb downstream 2816 true Tp57577_TGAC_v2_scaf_450: 131456-134271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_450: 132272-134271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 5.0kb upstream 5.0kb upstream 5816 true Tp57577_TGAC_v2_scaf_450: 126456-132271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_450: 126456-131455 Trifolium pratense
Tp57577_TGAC_v2_gene11134 5.0kb downstream 5.0kb downstream 5816 true Tp57577_TGAC_v2_scaf_450: 131456-137271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_450: 132272-137271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 10.0kb upstream 10.0kb upstream 10816 true Tp57577_TGAC_v2_scaf_450: 121456-132271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_450: 121456-131455 Trifolium pratense
Tp57577_TGAC_v2_gene11134 10.0kb downstream 10.0kb downstream 10816 true Tp57577_TGAC_v2_scaf_450: 131456-142271 Trifolium pratense
Tp57577_TGAC_v2_gene11134 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_450: 132272-142271 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121637870 5273 Angiosperm Singleton cluster - no MSA
122276771 5265 Fabidae Singleton cluster - no MSA
124017294 5270 Rosid Singleton cluster - no MSA
123591134 5271 Pentapetalae Singleton cluster - no MSA
122625825 5272 Eudicot Singleton cluster - no MSA
120909974 5274 Embryophyte Singleton cluster - no MSA
122950623 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain