Gene : Tp57577_TGAC_v2_gene30395 T. pratense v2
Defline:  (1 of 106) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  5
Name:  ? Tp57577_TGAC_v2_gene30395 Secondary Identifier:  ? PAC:35977121
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene30395 0.5kb upstream 0.5kb upstream 15143 true Tp57577_TGAC_v2_scaf_749: 43176-58318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_749: 43176-43675 Trifolium pratense
Tp57577_TGAC_v2_gene30395 0.5kb downstream 0.5kb downstream 15143 true Tp57577_TGAC_v2_scaf_749: 43676-58818 Trifolium pratense
Tp57577_TGAC_v2_gene30395 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_749: 58319-58818 Trifolium pratense
Tp57577_TGAC_v2_gene30395 1.0kb upstream 1.0kb upstream 15643 true Tp57577_TGAC_v2_scaf_749: 42676-58318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_749: 42676-43675 Trifolium pratense
Tp57577_TGAC_v2_gene30395 1.0kb downstream 1.0kb downstream 15643 true Tp57577_TGAC_v2_scaf_749: 43676-59318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_749: 58319-59318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 2.0kb upstream 2.0kb upstream 16643 true Tp57577_TGAC_v2_scaf_749: 41676-58318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_749: 41676-43675 Trifolium pratense
Tp57577_TGAC_v2_gene30395 2.0kb downstream 2.0kb downstream 16643 true Tp57577_TGAC_v2_scaf_749: 43676-60318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_749: 58319-60318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 5.0kb upstream 5.0kb upstream 19643 true Tp57577_TGAC_v2_scaf_749: 38676-58318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_749: 38676-43675 Trifolium pratense
Tp57577_TGAC_v2_gene30395 5.0kb downstream 5.0kb downstream 19643 true Tp57577_TGAC_v2_scaf_749: 43676-63318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_749: 58319-63318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 10.0kb upstream 10.0kb upstream 24643 true Tp57577_TGAC_v2_scaf_749: 33676-58318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_749: 33676-43675 Trifolium pratense
Tp57577_TGAC_v2_gene30395 10.0kb downstream 10.0kb downstream 24643 true Tp57577_TGAC_v2_scaf_749: 43676-68318 Trifolium pratense
Tp57577_TGAC_v2_gene30395 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_749: 58319-68318 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029860 5273 Angiosperm View MSA
122314921 5265 Fabidae View MSA
124071412 5270 Rosid View MSA
123753670 5271 Pentapetalae View MSA
122775191 5272 Eudicot View MSA
121350456 5274 Embryophyte View MSA
123381742 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain