Gene : Tp57577_TGAC_v2_gene30222 T. pratense v2
Defline:  (1 of 1) K00297 - methylenetetrahydrofolate reductase (NADPH) (metF, MTHFR) Genomic Order:  12
Name:  ? Tp57577_TGAC_v2_gene30222 Secondary Identifier:  ? PAC:35982954
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-3841 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene30222 0.5kb upstream 0.5kb upstream 6484 true Tp57577_TGAC_v2_scaf_470: 123796-130279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_470: 123796-124295 Trifolium pratense
Tp57577_TGAC_v2_gene30222 0.5kb downstream 0.5kb downstream 6484 true Tp57577_TGAC_v2_scaf_470: 124296-130779 Trifolium pratense
Tp57577_TGAC_v2_gene30222 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_470: 130280-130779 Trifolium pratense
Tp57577_TGAC_v2_gene30222 1.0kb upstream 1.0kb upstream 6984 true Tp57577_TGAC_v2_scaf_470: 123296-130279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_470: 123296-124295 Trifolium pratense
Tp57577_TGAC_v2_gene30222 1.0kb downstream 1.0kb downstream 6984 true Tp57577_TGAC_v2_scaf_470: 124296-131279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_470: 130280-131279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 2.0kb upstream 2.0kb upstream 7984 true Tp57577_TGAC_v2_scaf_470: 122296-130279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_470: 122296-124295 Trifolium pratense
Tp57577_TGAC_v2_gene30222 2.0kb downstream 2.0kb downstream 7984 true Tp57577_TGAC_v2_scaf_470: 124296-132279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_470: 130280-132279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 5.0kb upstream 5.0kb upstream 10984 true Tp57577_TGAC_v2_scaf_470: 119296-130279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_470: 119296-124295 Trifolium pratense
Tp57577_TGAC_v2_gene30222 5.0kb downstream 5.0kb downstream 10984 true Tp57577_TGAC_v2_scaf_470: 124296-135279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_470: 130280-135279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 10.0kb upstream 10.0kb upstream 15984 true Tp57577_TGAC_v2_scaf_470: 114296-130279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_470: 114296-124295 Trifolium pratense
Tp57577_TGAC_v2_gene30222 10.0kb downstream 10.0kb downstream 15984 true Tp57577_TGAC_v2_scaf_470: 124296-140279 Trifolium pratense
Tp57577_TGAC_v2_gene30222 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_470: 130280-140279 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026878 5273 Angiosperm View MSA
122305100 5265 Fabidae View MSA
124060505 5270 Rosid View MSA
123747521 5271 Pentapetalae View MSA
122785990 5272 Eudicot View MSA
121343836 5274 Embryophyte View MSA
123425603 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain