Gene : Tp57577_TGAC_v2_gene22540 T. pratense v2
Defline:  (1 of 1) 1.13.11.5 - Homogentisate 1,2-dioxygenase / Homogentisicase Genomic Order:  11
Name:  ? Tp57577_TGAC_v2_gene22540 Secondary Identifier:  ? PAC:35960751
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene22540 0.5kb upstream 0.5kb upstream 8957 true Tp57577_TGAC_v2_scaf_697: 63116-72072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_697: 63116-63615 Trifolium pratense
Tp57577_TGAC_v2_gene22540 0.5kb downstream 0.5kb downstream 8957 true Tp57577_TGAC_v2_scaf_697: 63616-72572 Trifolium pratense
Tp57577_TGAC_v2_gene22540 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_697: 72073-72572 Trifolium pratense
Tp57577_TGAC_v2_gene22540 1.0kb upstream 1.0kb upstream 9457 true Tp57577_TGAC_v2_scaf_697: 62616-72072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_697: 62616-63615 Trifolium pratense
Tp57577_TGAC_v2_gene22540 1.0kb downstream 1.0kb downstream 9457 true Tp57577_TGAC_v2_scaf_697: 63616-73072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_697: 72073-73072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 2.0kb upstream 2.0kb upstream 10457 true Tp57577_TGAC_v2_scaf_697: 61616-72072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_697: 61616-63615 Trifolium pratense
Tp57577_TGAC_v2_gene22540 2.0kb downstream 2.0kb downstream 10457 true Tp57577_TGAC_v2_scaf_697: 63616-74072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_697: 72073-74072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 5.0kb upstream 5.0kb upstream 13457 true Tp57577_TGAC_v2_scaf_697: 58616-72072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_697: 58616-63615 Trifolium pratense
Tp57577_TGAC_v2_gene22540 5.0kb downstream 5.0kb downstream 13457 true Tp57577_TGAC_v2_scaf_697: 63616-77072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_697: 72073-77072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 10.0kb upstream 10.0kb upstream 18457 true Tp57577_TGAC_v2_scaf_697: 53616-72072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_697: 53616-63615 Trifolium pratense
Tp57577_TGAC_v2_gene22540 10.0kb downstream 10.0kb downstream 18457 true Tp57577_TGAC_v2_scaf_697: 63616-82072 Trifolium pratense
Tp57577_TGAC_v2_gene22540 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_697: 72073-82072 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302891 5265 Fabidae View MSA
124064618 5270 Rosid View MSA
123740810 5271 Pentapetalae View MSA
122786399 5272 Eudicot View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain