Gene : Tp57577_TGAC_v2_gene30254 T. pratense v2
Defline:  (1 of 2) K10590 - E3 ubiquitin-protein ligase TRIP12 (TRIP12) Genomic Order:  11
Name:  ? Tp57577_TGAC_v2_gene30254 Secondary Identifier:  ? PAC:35967289
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7511 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene30254 0.5kb upstream 0.5kb upstream 9577 true Tp57577_TGAC_v2_scaf_746: 89777-99353 Trifolium pratense
Tp57577_TGAC_v2_gene30254 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_746: 98854-99353 Trifolium pratense
Tp57577_TGAC_v2_gene30254 0.5kb downstream 0.5kb downstream 9577 true Tp57577_TGAC_v2_scaf_746: 89277-98853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_746: 89277-89776 Trifolium pratense
Tp57577_TGAC_v2_gene30254 1.0kb upstream 1.0kb upstream 10077 true Tp57577_TGAC_v2_scaf_746: 89777-99853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_746: 98854-99853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 1.0kb downstream 1.0kb downstream 10077 true Tp57577_TGAC_v2_scaf_746: 88777-98853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_746: 88777-89776 Trifolium pratense
Tp57577_TGAC_v2_gene30254 2.0kb upstream 2.0kb upstream 11077 true Tp57577_TGAC_v2_scaf_746: 89777-100853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_746: 98854-100853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 2.0kb downstream 2.0kb downstream 11077 true Tp57577_TGAC_v2_scaf_746: 87777-98853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_746: 87777-89776 Trifolium pratense
Tp57577_TGAC_v2_gene30254 5.0kb upstream 5.0kb upstream 14077 true Tp57577_TGAC_v2_scaf_746: 89777-103853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_746: 98854-103853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 5.0kb downstream 5.0kb downstream 14077 true Tp57577_TGAC_v2_scaf_746: 84777-98853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_746: 84777-89776 Trifolium pratense
Tp57577_TGAC_v2_gene30254 10.0kb upstream 10.0kb upstream 17655 true Tp57577_TGAC_v2_scaf_746: 89777-107431 Trifolium pratense
Tp57577_TGAC_v2_gene30254 10.0kb upstream 10.0kb upstream 8578 false Tp57577_TGAC_v2_scaf_746: 98854-107431 Trifolium pratense
Tp57577_TGAC_v2_gene30254 10.0kb downstream 10.0kb downstream 19077 true Tp57577_TGAC_v2_scaf_746: 79777-98853 Trifolium pratense
Tp57577_TGAC_v2_gene30254 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_746: 79777-89776 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301785 5265 Fabidae View MSA
124066546 5270 Rosid View MSA
123736938 5271 Pentapetalae View MSA
122796953 5272 Eudicot View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain