Gene : Tp57577_TGAC_v2_gene29761 T. pratense v2
Defline:  (1 of 1) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  1
Name:  ? Tp57577_TGAC_v2_gene29761 Secondary Identifier:  ? PAC:35968998
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-695 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene29761 0.5kb upstream 0.5kb upstream 2886 true Tp57577_TGAC_v2_scaf_767: 20956-23841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_767: 20956-21455 Trifolium pratense
Tp57577_TGAC_v2_gene29761 0.5kb downstream 0.5kb downstream 2886 true Tp57577_TGAC_v2_scaf_767: 21456-24341 Trifolium pratense
Tp57577_TGAC_v2_gene29761 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_767: 23842-24341 Trifolium pratense
Tp57577_TGAC_v2_gene29761 1.0kb upstream 1.0kb upstream 3386 true Tp57577_TGAC_v2_scaf_767: 20456-23841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_767: 20456-21455 Trifolium pratense
Tp57577_TGAC_v2_gene29761 1.0kb downstream 1.0kb downstream 3386 true Tp57577_TGAC_v2_scaf_767: 21456-24841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_767: 23842-24841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 2.0kb upstream 2.0kb upstream 4386 true Tp57577_TGAC_v2_scaf_767: 19456-23841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_767: 19456-21455 Trifolium pratense
Tp57577_TGAC_v2_gene29761 2.0kb downstream 2.0kb downstream 4386 true Tp57577_TGAC_v2_scaf_767: 21456-25841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_767: 23842-25841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 5.0kb upstream 5.0kb upstream 7386 true Tp57577_TGAC_v2_scaf_767: 16456-23841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_767: 16456-21455 Trifolium pratense
Tp57577_TGAC_v2_gene29761 5.0kb downstream 5.0kb downstream 7386 true Tp57577_TGAC_v2_scaf_767: 21456-28841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_767: 23842-28841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 10.0kb upstream 10.0kb upstream 12386 true Tp57577_TGAC_v2_scaf_767: 11456-23841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_767: 11456-21455 Trifolium pratense
Tp57577_TGAC_v2_gene29761 10.0kb downstream 10.0kb downstream 12386 true Tp57577_TGAC_v2_scaf_767: 21456-33841 Trifolium pratense
Tp57577_TGAC_v2_gene29761 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_767: 23842-33841 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310479 5265 Fabidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain