Gene : Tp57577_TGAC_v2_gene3668 T. pratense v2
Defline:  (1 of 3) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  11
Name:  ? Tp57577_TGAC_v2_gene3668 Secondary Identifier:  ? PAC:35962009
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene3668 0.5kb upstream 0.5kb upstream 1335 true Tp57577_TGAC_v2_scaf_84: 92356-93690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_84: 92356-92855 Trifolium pratense
Tp57577_TGAC_v2_gene3668 0.5kb downstream 0.5kb downstream 1335 true Tp57577_TGAC_v2_scaf_84: 92856-94190 Trifolium pratense
Tp57577_TGAC_v2_gene3668 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_84: 93691-94190 Trifolium pratense
Tp57577_TGAC_v2_gene3668 1.0kb upstream 1.0kb upstream 1835 true Tp57577_TGAC_v2_scaf_84: 91856-93690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_84: 91856-92855 Trifolium pratense
Tp57577_TGAC_v2_gene3668 1.0kb downstream 1.0kb downstream 1835 true Tp57577_TGAC_v2_scaf_84: 92856-94690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_84: 93691-94690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 2.0kb upstream 2.0kb upstream 2835 true Tp57577_TGAC_v2_scaf_84: 90856-93690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_84: 90856-92855 Trifolium pratense
Tp57577_TGAC_v2_gene3668 2.0kb downstream 2.0kb downstream 2835 true Tp57577_TGAC_v2_scaf_84: 92856-95690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_84: 93691-95690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 5.0kb upstream 5.0kb upstream 5835 true Tp57577_TGAC_v2_scaf_84: 87856-93690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_84: 87856-92855 Trifolium pratense
Tp57577_TGAC_v2_gene3668 5.0kb downstream 5.0kb downstream 5835 true Tp57577_TGAC_v2_scaf_84: 92856-98690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_84: 93691-98690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 10.0kb upstream 10.0kb upstream 10835 true Tp57577_TGAC_v2_scaf_84: 82856-93690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_84: 82856-92855 Trifolium pratense
Tp57577_TGAC_v2_gene3668 10.0kb downstream 10.0kb downstream 10835 true Tp57577_TGAC_v2_scaf_84: 92856-103690 Trifolium pratense
Tp57577_TGAC_v2_gene3668 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_84: 93691-103690 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305386 5265 Fabidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain