Gene : Tp57577_TGAC_v2_gene22992 T. pratense v2
Defline:  (1 of 1) PTHR31423:SF3 - PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  7
Name:  ? Tp57577_TGAC_v2_gene22992 Secondary Identifier:  ? PAC:35977236
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense TRNA-CHARGING-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene22992 0.5kb upstream 0.5kb upstream 7304 true Tp57577_TGAC_v2_scaf_942: 56652-63955 Trifolium pratense
Tp57577_TGAC_v2_gene22992 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_942: 63456-63955 Trifolium pratense
Tp57577_TGAC_v2_gene22992 0.5kb downstream 0.5kb downstream 7304 true Tp57577_TGAC_v2_scaf_942: 56152-63455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_942: 56152-56651 Trifolium pratense
Tp57577_TGAC_v2_gene22992 1.0kb upstream 1.0kb upstream 7804 true Tp57577_TGAC_v2_scaf_942: 56652-64455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_942: 63456-64455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 1.0kb downstream 1.0kb downstream 7804 true Tp57577_TGAC_v2_scaf_942: 55652-63455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_942: 55652-56651 Trifolium pratense
Tp57577_TGAC_v2_gene22992 2.0kb upstream 2.0kb upstream 8804 true Tp57577_TGAC_v2_scaf_942: 56652-65455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_942: 63456-65455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 2.0kb downstream 2.0kb downstream 8804 true Tp57577_TGAC_v2_scaf_942: 54652-63455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_942: 54652-56651 Trifolium pratense
Tp57577_TGAC_v2_gene22992 5.0kb upstream 5.0kb upstream 11804 true Tp57577_TGAC_v2_scaf_942: 56652-68455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_942: 63456-68455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 5.0kb downstream 5.0kb downstream 11804 true Tp57577_TGAC_v2_scaf_942: 51652-63455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_942: 51652-56651 Trifolium pratense
Tp57577_TGAC_v2_gene22992 10.0kb upstream 10.0kb upstream 16679 true Tp57577_TGAC_v2_scaf_942: 56652-73330 Trifolium pratense
Tp57577_TGAC_v2_gene22992 10.0kb upstream 10.0kb upstream 9875 false Tp57577_TGAC_v2_scaf_942: 63456-73330 Trifolium pratense
Tp57577_TGAC_v2_gene22992 10.0kb downstream 10.0kb downstream 16804 true Tp57577_TGAC_v2_scaf_942: 46652-63455 Trifolium pratense
Tp57577_TGAC_v2_gene22992 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_942: 46652-56651 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304964 5265 Fabidae View MSA
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain