Protein Domain : IPR004536

Type:  Family Name:  Selenophosphate synthetase
Description:  The UGA (TGA) codon is normally a termination codon, however it is also used as a selenocysteine (Sec) codon by numerous organisms []. Sec is the 21st amino acid that is inserted into selenoproteins (protein that includes a selenocysteine (Se-Cys) amino acid residue). The synthesis of Sec and its incorporation into proteins requires the activity of a number of proteins, one of which is selenophosphate synthetase (SPS), also known as the SelD gene product [, ]. SPS catalises the production of the selenium donor compound monoselenophosphate (MSP) from selenide and ATP. MSP is then used to synthesize Sec from seryl-tRNAs []. SPS was initially identified in E. coli as the product of the gene selD, one of four essential selenoprotein synthesis genes (selA-D) []. SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. Later, the selD homologues from eukaryotes, bacteria, and archaea were identified [].In mammals, two gene products, SPS1 and SPS2 are proposed to be selenophosphate synthetases. SPS1 may be involved in Sec recycling via a selenium salvage pathway, whereas SPS2 may play a role in the synthesis of selenophosphate []. SPS2 is a selenoprotein and could serve as an autoregulator of selenoprotein synthesis []. Drosophila SPS1 (UniProt: O18373) lacks selenide-dependent SPS activity due to an arginine substitution of the critical Cys (or Sec) residue in the catalytic domain of the enzyme when expressed in E. coli []. Drosophila SPS2 (also known as Dsps2) is a selenoprotein that contains a UGA stop codon in the catalytic centre of the enzyme, nevertheless, the read-through activity can be provided by a mammalian-like SECIS element in its 3'UTR []. Short Name:  SPS/SelD

1 Child Features

DB identifier Type Name
IPR023061 Family Selenophosphate synthetase, class I

1 Contains

DB identifier Type Name
IPR010918 Domain AIR synthase-related protein, C-terminal domain

2 Cross Referencess

Identifier
PIRSF036407
TIGR00476

0 Found In

1 GO Annotation

GO Term Gene Name
GO:0005524 IPR004536

1 Ontology Annotations

GO Term Gene Name
GO:0005524 IPR004536

0 Parent Features

17 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
18001 I0YS58 PAC:27386188 Coccomyxa subellipsoidea C-169 779  
70214 C1MZ58 PAC:27344249 Micromonas pusilla CCMP1545 807  
112686 C1E7V6 PAC:27402311 Micromonas sp RCC299 804  
41986 A4S9M0 PAC:27419032 Ostreococcus lucimarinus 796  
Cre13.g562501.t1.1 A0A2K3CZ09 PAC:30784394 Chlamydomonas reinhardtii 450  
Brdisv1pangenome1006146m.p PAC:33641149 Brachypodium distachyon Pangenome 239  
Brdisv1pangenome1006798m.p PAC:33624588 Brachypodium distachyon Pangenome 619  
Brdisv1pangenome1008329m.p PAC:33623256 Brachypodium distachyon Pangenome 254  
Brdisv1pangenome1007656m.p PAC:33656954 Brachypodium distachyon Pangenome 344  
Brdisv1BdTR11A1049107m.p PAC:35691092 Brachypodium distachyon BdTR11a 249  
Brdisv1BdTR11A1043905m.p PAC:35689709 Brachypodium distachyon BdTR11a 360  
Brdisv1BdTR11A1042667m.p PAC:35695859 Brachypodium distachyon BdTR11a 510  
Brdisv1BdTR11A1041603m.p PAC:35688310 Brachypodium distachyon BdTR11a 344  
Brdisv1BdTR11A1037331m.p PAC:35684867 Brachypodium distachyon BdTR11a 239  
Cz02g15050.t1 PAC:38247071 Chromochloris zofingiensis 828  
Bobra.0134s0002.1.p PAC:40706294 Botryococcus braunii 316  
Vocar.0028s0126.1.p PAC:32895547 Volvox carteri 420  

7 Publications

First Author Title Year Journal Volume Pages PubMed ID
            2142875
            9398525
            8986768
            8811175
            2405383
            15534230
            11258485