Gene : MicpuC2.estExt_fgenesh1_pg.C_50136 M. pusilla CCMP1545 v3.0
Defline:  (1 of 3) PF00090 - Thrombospondin type 1 domain (TSP_1) Genomic Order:  222
Name:  ? MicpuC2.estExt_fgenesh1_pg.C_50136 Secondary Identifier:  ? PAC:27341756
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
MicpuC2.estExt_fgenesh1_pg.C_50136 0.5kb upstream 0.5kb upstream 12906 true scaffold_5: 447409-460314 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 459815-460314 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 0.5kb downstream 0.5kb downstream 12906 true scaffold_5: 446909-459814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 446909-447408 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 1.0kb upstream 1.0kb upstream 13406 true scaffold_5: 447409-460814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 459815-460814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 1.0kb downstream 1.0kb downstream 13406 true scaffold_5: 446409-459814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 446409-447408 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 2.0kb upstream 2.0kb upstream 14406 true scaffold_5: 447409-461814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 459815-461814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 2.0kb downstream 2.0kb downstream 14406 true scaffold_5: 445409-459814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 445409-447408 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 5.0kb upstream 5.0kb upstream 17406 true scaffold_5: 447409-464814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 459815-464814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 5.0kb downstream 5.0kb downstream 17406 true scaffold_5: 442409-459814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 442409-447408 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 10.0kb upstream 10.0kb upstream 22406 true scaffold_5: 447409-469814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 459815-469814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 10.0kb downstream 10.0kb downstream 22406 true scaffold_5: 437409-459814 Micromonas pusilla CCMP1545
MicpuC2.estExt_fgenesh1_pg.C_50136 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 437409-447408 Micromonas pusilla CCMP1545

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124101159 5260 Chlorophyte Singleton cluster - no MSA
123416547 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

1 Strain

DB identifier