Gene : DCAR_012895 D. carota v2.0
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3177
Name:  ? DCAR_012895 Secondary Identifier:  ? PAC:36080379
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
DCAR_012895 0.5kb upstream 0.5kb upstream 3390 true DCARv2_Chr4: 34449621-34453010 Daucus carota
DCAR_012895 0.5kb upstream 0.5kb upstream 500 false DCARv2_Chr4: 34452511-34453010 Daucus carota
DCAR_012895 0.5kb downstream 0.5kb downstream 3390 true DCARv2_Chr4: 34449121-34452510 Daucus carota
DCAR_012895 0.5kb downstream 0.5kb downstream 500 false DCARv2_Chr4: 34449121-34449620 Daucus carota
DCAR_012895 1.0kb upstream 1.0kb upstream 3890 true DCARv2_Chr4: 34449621-34453510 Daucus carota
DCAR_012895 1.0kb upstream 1.0kb upstream 1000 false DCARv2_Chr4: 34452511-34453510 Daucus carota
DCAR_012895 1.0kb downstream 1.0kb downstream 3890 true DCARv2_Chr4: 34448621-34452510 Daucus carota
DCAR_012895 1.0kb downstream 1.0kb downstream 1000 false DCARv2_Chr4: 34448621-34449620 Daucus carota
DCAR_012895 2.0kb upstream 2.0kb upstream 4890 true DCARv2_Chr4: 34449621-34454510 Daucus carota
DCAR_012895 2.0kb upstream 2.0kb upstream 2000 false DCARv2_Chr4: 34452511-34454510 Daucus carota
DCAR_012895 2.0kb downstream 2.0kb downstream 4890 true DCARv2_Chr4: 34447621-34452510 Daucus carota
DCAR_012895 2.0kb downstream 2.0kb downstream 2000 false DCARv2_Chr4: 34447621-34449620 Daucus carota
DCAR_012895 5.0kb upstream 5.0kb upstream 7890 true DCARv2_Chr4: 34449621-34457510 Daucus carota
DCAR_012895 5.0kb upstream 5.0kb upstream 5000 false DCARv2_Chr4: 34452511-34457510 Daucus carota
DCAR_012895 5.0kb downstream 5.0kb downstream 7890 true DCARv2_Chr4: 34444621-34452510 Daucus carota
DCAR_012895 5.0kb downstream 5.0kb downstream 5000 false DCARv2_Chr4: 34444621-34449620 Daucus carota
DCAR_012895 10.0kb upstream 10.0kb upstream 12890 true DCARv2_Chr4: 34449621-34462510 Daucus carota
DCAR_012895 10.0kb upstream 10.0kb upstream 10000 false DCARv2_Chr4: 34452511-34462510 Daucus carota
DCAR_012895 10.0kb downstream 10.0kb downstream 12890 true DCARv2_Chr4: 34439621-34452510 Daucus carota
DCAR_012895 10.0kb downstream 10.0kb downstream 10000 false DCARv2_Chr4: 34439621-34449620 Daucus carota

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479350 5263 Asterids View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain