Gene : DCAR_019225 D. carota v2.0
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3157
Name:  ? DCAR_019225 Secondary Identifier:  ? PAC:36076042
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
DCAR_019225 0.5kb upstream 0.5kb upstream 2519 true DCARv2_Chr5: 37228414-37230932 Daucus carota
DCAR_019225 0.5kb upstream 0.5kb upstream 500 false DCARv2_Chr5: 37230433-37230932 Daucus carota
DCAR_019225 0.5kb downstream 0.5kb downstream 2519 true DCARv2_Chr5: 37227914-37230432 Daucus carota
DCAR_019225 0.5kb downstream 0.5kb downstream 500 false DCARv2_Chr5: 37227914-37228413 Daucus carota
DCAR_019225 1.0kb upstream 1.0kb upstream 3019 true DCARv2_Chr5: 37228414-37231432 Daucus carota
DCAR_019225 1.0kb upstream 1.0kb upstream 1000 false DCARv2_Chr5: 37230433-37231432 Daucus carota
DCAR_019225 1.0kb downstream 1.0kb downstream 3019 true DCARv2_Chr5: 37227414-37230432 Daucus carota
DCAR_019225 1.0kb downstream 1.0kb downstream 1000 false DCARv2_Chr5: 37227414-37228413 Daucus carota
DCAR_019225 2.0kb upstream 2.0kb upstream 4019 true DCARv2_Chr5: 37228414-37232432 Daucus carota
DCAR_019225 2.0kb upstream 2.0kb upstream 2000 false DCARv2_Chr5: 37230433-37232432 Daucus carota
DCAR_019225 2.0kb downstream 2.0kb downstream 4019 true DCARv2_Chr5: 37226414-37230432 Daucus carota
DCAR_019225 2.0kb downstream 2.0kb downstream 2000 false DCARv2_Chr5: 37226414-37228413 Daucus carota
DCAR_019225 5.0kb upstream 5.0kb upstream 7019 true DCARv2_Chr5: 37228414-37235432 Daucus carota
DCAR_019225 5.0kb upstream 5.0kb upstream 5000 false DCARv2_Chr5: 37230433-37235432 Daucus carota
DCAR_019225 5.0kb downstream 5.0kb downstream 7019 true DCARv2_Chr5: 37223414-37230432 Daucus carota
DCAR_019225 5.0kb downstream 5.0kb downstream 5000 false DCARv2_Chr5: 37223414-37228413 Daucus carota
DCAR_019225 10.0kb upstream 10.0kb upstream 12019 true DCARv2_Chr5: 37228414-37240432 Daucus carota
DCAR_019225 10.0kb upstream 10.0kb upstream 10000 false DCARv2_Chr5: 37230433-37240432 Daucus carota
DCAR_019225 10.0kb downstream 10.0kb downstream 12019 true DCARv2_Chr5: 37218414-37230432 Daucus carota
DCAR_019225 10.0kb downstream 10.0kb downstream 10000 false DCARv2_Chr5: 37218414-37228413 Daucus carota

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479350 5263 Asterids View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain