Gene : Solyc05g056250.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Description:  Asparaginyl-tRNA synthetase (AHRD V1 **** SYN_PYRHO); contains Interpro domain(s) IPR004523 Aspartyl-tRNA synthetase, class IIb, archea/euk type
Genomic Order:  2384 Name:  ? Solyc05g056250.2
Secondary Identifier:  ? PAC:36146154
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum TRNA-CHARGING-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g056250.2 0.5kb upstream 0.5kb upstream 7024 true SL2.50ch05: 65602533-65609556 Solanum lycopersicum
Solyc05g056250.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 65609057-65609556 Solanum lycopersicum
Solyc05g056250.2 0.5kb downstream 0.5kb downstream 7024 true SL2.50ch05: 65602033-65609056 Solanum lycopersicum
Solyc05g056250.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 65602033-65602532 Solanum lycopersicum
Solyc05g056250.2 1.0kb upstream 1.0kb upstream 7524 true SL2.50ch05: 65602533-65610056 Solanum lycopersicum
Solyc05g056250.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 65609057-65610056 Solanum lycopersicum
Solyc05g056250.2 1.0kb downstream 1.0kb downstream 7524 true SL2.50ch05: 65601533-65609056 Solanum lycopersicum
Solyc05g056250.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 65601533-65602532 Solanum lycopersicum
Solyc05g056250.2 2.0kb upstream 2.0kb upstream 8524 true SL2.50ch05: 65602533-65611056 Solanum lycopersicum
Solyc05g056250.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 65609057-65611056 Solanum lycopersicum
Solyc05g056250.2 2.0kb downstream 2.0kb downstream 8524 true SL2.50ch05: 65600533-65609056 Solanum lycopersicum
Solyc05g056250.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 65600533-65602532 Solanum lycopersicum
Solyc05g056250.2 5.0kb upstream 5.0kb upstream 11524 true SL2.50ch05: 65602533-65614056 Solanum lycopersicum
Solyc05g056250.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 65609057-65614056 Solanum lycopersicum
Solyc05g056250.2 5.0kb downstream 5.0kb downstream 11524 true SL2.50ch05: 65597533-65609056 Solanum lycopersicum
Solyc05g056250.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 65597533-65602532 Solanum lycopersicum
Solyc05g056250.2 10.0kb upstream 10.0kb upstream 16524 true SL2.50ch05: 65602533-65619056 Solanum lycopersicum
Solyc05g056250.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 65609057-65619056 Solanum lycopersicum
Solyc05g056250.2 10.0kb downstream 10.0kb downstream 16524 true SL2.50ch05: 65592533-65609056 Solanum lycopersicum
Solyc05g056250.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 65592533-65602532 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470389 5263 Asterids View MSA
123746132 5271 Pentapetalae View MSA
122792438 5272 Eudicot View MSA
122047949 5273 Angiosperm View MSA
121349506 5274 Embryophyte View MSA
123428007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain