Gene : Solyc01g090650.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) KOG1002 - Nucleotide excision repair protein RAD16 Description:  Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 **-- CHD1L_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related
Genomic Order:  2420 Name:  ? Solyc01g090650.1
Secondary Identifier:  ? PAC:36140054
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g090650.1 0.5kb upstream 0.5kb upstream 10427 true SL2.50ch01: 84288640-84299066 Solanum lycopersicum
Solyc01g090650.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 84298567-84299066 Solanum lycopersicum
Solyc01g090650.1 0.5kb downstream 0.5kb downstream 10427 true SL2.50ch01: 84288140-84298566 Solanum lycopersicum
Solyc01g090650.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 84288140-84288639 Solanum lycopersicum
Solyc01g090650.1 1.0kb upstream 1.0kb upstream 10927 true SL2.50ch01: 84288640-84299566 Solanum lycopersicum
Solyc01g090650.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 84298567-84299566 Solanum lycopersicum
Solyc01g090650.1 1.0kb downstream 1.0kb downstream 10927 true SL2.50ch01: 84287640-84298566 Solanum lycopersicum
Solyc01g090650.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 84287640-84288639 Solanum lycopersicum
Solyc01g090650.1 2.0kb upstream 2.0kb upstream 11927 true SL2.50ch01: 84288640-84300566 Solanum lycopersicum
Solyc01g090650.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 84298567-84300566 Solanum lycopersicum
Solyc01g090650.1 2.0kb downstream 2.0kb downstream 11927 true SL2.50ch01: 84286640-84298566 Solanum lycopersicum
Solyc01g090650.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 84286640-84288639 Solanum lycopersicum
Solyc01g090650.1 5.0kb upstream 5.0kb upstream 14927 true SL2.50ch01: 84288640-84303566 Solanum lycopersicum
Solyc01g090650.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 84298567-84303566 Solanum lycopersicum
Solyc01g090650.1 5.0kb downstream 5.0kb downstream 14927 true SL2.50ch01: 84283640-84298566 Solanum lycopersicum
Solyc01g090650.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 84283640-84288639 Solanum lycopersicum
Solyc01g090650.1 10.0kb upstream 10.0kb upstream 19927 true SL2.50ch01: 84288640-84308566 Solanum lycopersicum
Solyc01g090650.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 84298567-84308566 Solanum lycopersicum
Solyc01g090650.1 10.0kb downstream 10.0kb downstream 19927 true SL2.50ch01: 84278640-84298566 Solanum lycopersicum
Solyc01g090650.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 84278640-84288639 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026277 5273 Angiosperm View MSA
121473900 5263 Asterids View MSA
123740269 5271 Pentapetalae View MSA
122792604 5272 Eudicot View MSA
121347907 5274 Embryophyte View MSA
123380672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain