Gene : Solyc01g090600.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Description:  Chalcone synthase 3 protein (AHRD V1 ***- D5LQ17_BRARA); contains Interpro domain(s) IPR001099 Chalcone/stilbene synthase, N-terminal
Genomic Order:  2415 Name:  ? Solyc01g090600.2
Secondary Identifier:  ? PAC:36137463
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g090600.2 0.5kb upstream 0.5kb upstream 2103 true SL2.50ch01: 84269539-84271641 Solanum lycopersicum
Solyc01g090600.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 84271142-84271641 Solanum lycopersicum
Solyc01g090600.2 0.5kb downstream 0.5kb downstream 2103 true SL2.50ch01: 84269039-84271141 Solanum lycopersicum
Solyc01g090600.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 84269039-84269538 Solanum lycopersicum
Solyc01g090600.2 1.0kb upstream 1.0kb upstream 2603 true SL2.50ch01: 84269539-84272141 Solanum lycopersicum
Solyc01g090600.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 84271142-84272141 Solanum lycopersicum
Solyc01g090600.2 1.0kb downstream 1.0kb downstream 2603 true SL2.50ch01: 84268539-84271141 Solanum lycopersicum
Solyc01g090600.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 84268539-84269538 Solanum lycopersicum
Solyc01g090600.2 2.0kb upstream 2.0kb upstream 3603 true SL2.50ch01: 84269539-84273141 Solanum lycopersicum
Solyc01g090600.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 84271142-84273141 Solanum lycopersicum
Solyc01g090600.2 2.0kb downstream 2.0kb downstream 3603 true SL2.50ch01: 84267539-84271141 Solanum lycopersicum
Solyc01g090600.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 84267539-84269538 Solanum lycopersicum
Solyc01g090600.2 5.0kb upstream 5.0kb upstream 6603 true SL2.50ch01: 84269539-84276141 Solanum lycopersicum
Solyc01g090600.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 84271142-84276141 Solanum lycopersicum
Solyc01g090600.2 5.0kb downstream 5.0kb downstream 6603 true SL2.50ch01: 84264539-84271141 Solanum lycopersicum
Solyc01g090600.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 84264539-84269538 Solanum lycopersicum
Solyc01g090600.2 10.0kb upstream 10.0kb upstream 11603 true SL2.50ch01: 84269539-84281141 Solanum lycopersicum
Solyc01g090600.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 84271142-84281141 Solanum lycopersicum
Solyc01g090600.2 10.0kb downstream 10.0kb downstream 11603 true SL2.50ch01: 84259539-84271141 Solanum lycopersicum
Solyc01g090600.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 84259539-84269538 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478589 5263 Asterids View MSA
123739380 5271 Pentapetalae View MSA
122792095 5272 Eudicot View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain