Gene : Solyc05g053540.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 4.2.1.9 - Dihydroxy-acid dehydratase Description:  Dihydroxy-acid dehydratase (AHRD V1 **** A6C1E8_9PLAN); contains Interpro domain(s) IPR004404 Dihydroxy-acid dehydratase
Genomic Order:  2114 Name:  ? Solyc05g053540.2
Secondary Identifier:  ? PAC:36144230
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum BRANCHED-CHAIN-AA-SYN-PWY Solanum lycopersicum pathologic  
Slycopersicum ILEUSYN-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-3001 Solanum lycopersicum pathologic  
Slycopersicum VALSYN-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g053540.2 0.5kb upstream 0.5kb upstream 7436 true SL2.50ch05: 63618515-63625950 Solanum lycopersicum
Solyc05g053540.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 63625451-63625950 Solanum lycopersicum
Solyc05g053540.2 0.5kb downstream 0.5kb downstream 7436 true SL2.50ch05: 63618015-63625450 Solanum lycopersicum
Solyc05g053540.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 63618015-63618514 Solanum lycopersicum
Solyc05g053540.2 1.0kb upstream 1.0kb upstream 7936 true SL2.50ch05: 63618515-63626450 Solanum lycopersicum
Solyc05g053540.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 63625451-63626450 Solanum lycopersicum
Solyc05g053540.2 1.0kb downstream 1.0kb downstream 7936 true SL2.50ch05: 63617515-63625450 Solanum lycopersicum
Solyc05g053540.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 63617515-63618514 Solanum lycopersicum
Solyc05g053540.2 2.0kb upstream 2.0kb upstream 8936 true SL2.50ch05: 63618515-63627450 Solanum lycopersicum
Solyc05g053540.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 63625451-63627450 Solanum lycopersicum
Solyc05g053540.2 2.0kb downstream 2.0kb downstream 8936 true SL2.50ch05: 63616515-63625450 Solanum lycopersicum
Solyc05g053540.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 63616515-63618514 Solanum lycopersicum
Solyc05g053540.2 5.0kb upstream 5.0kb upstream 11936 true SL2.50ch05: 63618515-63630450 Solanum lycopersicum
Solyc05g053540.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 63625451-63630450 Solanum lycopersicum
Solyc05g053540.2 5.0kb downstream 5.0kb downstream 11936 true SL2.50ch05: 63613515-63625450 Solanum lycopersicum
Solyc05g053540.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 63613515-63618514 Solanum lycopersicum
Solyc05g053540.2 10.0kb upstream 10.0kb upstream 16936 true SL2.50ch05: 63618515-63635450 Solanum lycopersicum
Solyc05g053540.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 63625451-63635450 Solanum lycopersicum
Solyc05g053540.2 10.0kb downstream 10.0kb downstream 16936 true SL2.50ch05: 63608515-63625450 Solanum lycopersicum
Solyc05g053540.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 63608515-63618514 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121386347 5263 Asterids View MSA
123742145 5271 Pentapetalae View MSA
122787783 5272 Eudicot View MSA
122041651 5273 Angiosperm View MSA
121345047 5274 Embryophyte View MSA
123424997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain