Gene : Solyc01g089870.2 S. lycopersicum ITAG2.4
Defline:  (1 of 393) PF01535 - PPR repeat (PPR) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP29_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2342 Name:  ? Solyc01g089870.2
Secondary Identifier:  ? PAC:36141143
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g089870.2 0.5kb upstream 0.5kb upstream 3645 true SL2.50ch01: 83598079-83601723 Solanum lycopersicum
Solyc01g089870.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 83601224-83601723 Solanum lycopersicum
Solyc01g089870.2 0.5kb downstream 0.5kb downstream 3645 true SL2.50ch01: 83597579-83601223 Solanum lycopersicum
Solyc01g089870.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 83597579-83598078 Solanum lycopersicum
Solyc01g089870.2 1.0kb upstream 1.0kb upstream 4145 true SL2.50ch01: 83598079-83602223 Solanum lycopersicum
Solyc01g089870.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 83601224-83602223 Solanum lycopersicum
Solyc01g089870.2 1.0kb downstream 1.0kb downstream 4145 true SL2.50ch01: 83597079-83601223 Solanum lycopersicum
Solyc01g089870.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 83597079-83598078 Solanum lycopersicum
Solyc01g089870.2 2.0kb upstream 2.0kb upstream 5145 true SL2.50ch01: 83598079-83603223 Solanum lycopersicum
Solyc01g089870.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 83601224-83603223 Solanum lycopersicum
Solyc01g089870.2 2.0kb downstream 2.0kb downstream 5145 true SL2.50ch01: 83596079-83601223 Solanum lycopersicum
Solyc01g089870.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 83596079-83598078 Solanum lycopersicum
Solyc01g089870.2 5.0kb upstream 5.0kb upstream 8145 true SL2.50ch01: 83598079-83606223 Solanum lycopersicum
Solyc01g089870.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 83601224-83606223 Solanum lycopersicum
Solyc01g089870.2 5.0kb downstream 5.0kb downstream 8145 true SL2.50ch01: 83593079-83601223 Solanum lycopersicum
Solyc01g089870.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 83593079-83598078 Solanum lycopersicum
Solyc01g089870.2 10.0kb upstream 10.0kb upstream 13145 true SL2.50ch01: 83598079-83611223 Solanum lycopersicum
Solyc01g089870.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 83601224-83611223 Solanum lycopersicum
Solyc01g089870.2 10.0kb downstream 10.0kb downstream 13145 true SL2.50ch01: 83588079-83601223 Solanum lycopersicum
Solyc01g089870.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 83588079-83598078 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476012 5263 Asterids View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain