Gene : Solyc05g051340.1 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KTN3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  1895 Name:  ? Solyc05g051340.1
Secondary Identifier:  ? PAC:36144350
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g051340.1 0.5kb upstream 0.5kb upstream 2159 true SL2.50ch05: 61612427-61614585 Solanum lycopersicum
Solyc05g051340.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 61612427-61612926 Solanum lycopersicum
Solyc05g051340.1 0.5kb downstream 0.5kb downstream 2159 true SL2.50ch05: 61612927-61615085 Solanum lycopersicum
Solyc05g051340.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 61614586-61615085 Solanum lycopersicum
Solyc05g051340.1 1.0kb upstream 1.0kb upstream 2659 true SL2.50ch05: 61611927-61614585 Solanum lycopersicum
Solyc05g051340.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 61611927-61612926 Solanum lycopersicum
Solyc05g051340.1 1.0kb downstream 1.0kb downstream 2659 true SL2.50ch05: 61612927-61615585 Solanum lycopersicum
Solyc05g051340.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 61614586-61615585 Solanum lycopersicum
Solyc05g051340.1 2.0kb upstream 2.0kb upstream 3659 true SL2.50ch05: 61610927-61614585 Solanum lycopersicum
Solyc05g051340.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 61610927-61612926 Solanum lycopersicum
Solyc05g051340.1 2.0kb downstream 2.0kb downstream 3659 true SL2.50ch05: 61612927-61616585 Solanum lycopersicum
Solyc05g051340.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 61614586-61616585 Solanum lycopersicum
Solyc05g051340.1 5.0kb upstream 5.0kb upstream 6659 true SL2.50ch05: 61607927-61614585 Solanum lycopersicum
Solyc05g051340.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 61607927-61612926 Solanum lycopersicum
Solyc05g051340.1 5.0kb downstream 5.0kb downstream 6659 true SL2.50ch05: 61612927-61619585 Solanum lycopersicum
Solyc05g051340.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 61614586-61619585 Solanum lycopersicum
Solyc05g051340.1 10.0kb upstream 10.0kb upstream 11659 true SL2.50ch05: 61602927-61614585 Solanum lycopersicum
Solyc05g051340.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 61602927-61612926 Solanum lycopersicum
Solyc05g051340.1 10.0kb downstream 10.0kb downstream 11659 true SL2.50ch05: 61612927-61624585 Solanum lycopersicum
Solyc05g051340.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 61614586-61624585 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041181 5273 Angiosperm View MSA
121469586 5263 Asterids View MSA
123748869 5271 Pentapetalae View MSA
122792190 5272 Eudicot View MSA
121309811 5274 Embryophyte View MSA
123347464 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain