Gene : Solyc05g050940.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 2.6.99.4 - Transferred entry: 2.3.1.234 Description:  O-sialoglycoprotein endopeptidase (AHRD V1 ***- B6SU43_MAIZE); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup
Genomic Order:  1856 Name:  ? Solyc05g050940.2
Secondary Identifier:  ? PAC:36145046
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY0-1587 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g050940.2 0.5kb upstream 0.5kb upstream 7739 true SL2.50ch05: 61165476-61173214 Solanum lycopersicum
Solyc05g050940.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 61165476-61165975 Solanum lycopersicum
Solyc05g050940.2 0.5kb downstream 0.5kb downstream 7739 true SL2.50ch05: 61165976-61173714 Solanum lycopersicum
Solyc05g050940.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 61173215-61173714 Solanum lycopersicum
Solyc05g050940.2 1.0kb upstream 1.0kb upstream 8239 true SL2.50ch05: 61164976-61173214 Solanum lycopersicum
Solyc05g050940.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 61164976-61165975 Solanum lycopersicum
Solyc05g050940.2 1.0kb downstream 1.0kb downstream 8239 true SL2.50ch05: 61165976-61174214 Solanum lycopersicum
Solyc05g050940.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 61173215-61174214 Solanum lycopersicum
Solyc05g050940.2 2.0kb upstream 2.0kb upstream 9239 true SL2.50ch05: 61163976-61173214 Solanum lycopersicum
Solyc05g050940.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 61163976-61165975 Solanum lycopersicum
Solyc05g050940.2 2.0kb downstream 2.0kb downstream 9239 true SL2.50ch05: 61165976-61175214 Solanum lycopersicum
Solyc05g050940.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 61173215-61175214 Solanum lycopersicum
Solyc05g050940.2 5.0kb upstream 5.0kb upstream 12239 true SL2.50ch05: 61160976-61173214 Solanum lycopersicum
Solyc05g050940.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 61160976-61165975 Solanum lycopersicum
Solyc05g050940.2 5.0kb downstream 5.0kb downstream 12239 true SL2.50ch05: 61165976-61178214 Solanum lycopersicum
Solyc05g050940.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 61173215-61178214 Solanum lycopersicum
Solyc05g050940.2 10.0kb upstream 10.0kb upstream 17239 true SL2.50ch05: 61155976-61173214 Solanum lycopersicum
Solyc05g050940.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 61155976-61165975 Solanum lycopersicum
Solyc05g050940.2 10.0kb downstream 10.0kb downstream 17239 true SL2.50ch05: 61165976-61183214 Solanum lycopersicum
Solyc05g050940.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 61173215-61183214 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469507 5263 Asterids View MSA
123747951 5271 Pentapetalae View MSA
122791458 5272 Eudicot View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain