Gene : Solyc05g047580.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K01853 - cycloartenol synthase (E5.4.99.8) Description:  Lanosterol synthase (AHRD V1 **** Q1ERD3_LOTJA); contains Interpro domain(s) IPR018333 Squalene cyclase
Genomic Order:  1721 Name:  ? Solyc05g047580.2
Secondary Identifier:  ? PAC:36146063
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-2541 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g047580.2 0.5kb upstream 0.5kb upstream 11056 true SL2.50ch05: 59040928-59051983 Solanum lycopersicum
Solyc05g047580.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 59051484-59051983 Solanum lycopersicum
Solyc05g047580.2 0.5kb downstream 0.5kb downstream 11056 true SL2.50ch05: 59040428-59051483 Solanum lycopersicum
Solyc05g047580.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 59040428-59040927 Solanum lycopersicum
Solyc05g047580.2 1.0kb upstream 1.0kb upstream 11556 true SL2.50ch05: 59040928-59052483 Solanum lycopersicum
Solyc05g047580.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 59051484-59052483 Solanum lycopersicum
Solyc05g047580.2 1.0kb downstream 1.0kb downstream 11556 true SL2.50ch05: 59039928-59051483 Solanum lycopersicum
Solyc05g047580.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 59039928-59040927 Solanum lycopersicum
Solyc05g047580.2 2.0kb upstream 2.0kb upstream 12556 true SL2.50ch05: 59040928-59053483 Solanum lycopersicum
Solyc05g047580.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 59051484-59053483 Solanum lycopersicum
Solyc05g047580.2 2.0kb downstream 2.0kb downstream 12556 true SL2.50ch05: 59038928-59051483 Solanum lycopersicum
Solyc05g047580.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 59038928-59040927 Solanum lycopersicum
Solyc05g047580.2 5.0kb upstream 5.0kb upstream 15556 true SL2.50ch05: 59040928-59056483 Solanum lycopersicum
Solyc05g047580.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 59051484-59056483 Solanum lycopersicum
Solyc05g047580.2 5.0kb downstream 5.0kb downstream 15556 true SL2.50ch05: 59035928-59051483 Solanum lycopersicum
Solyc05g047580.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 59035928-59040927 Solanum lycopersicum
Solyc05g047580.2 10.0kb upstream 10.0kb upstream 20556 true SL2.50ch05: 59040928-59061483 Solanum lycopersicum
Solyc05g047580.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 59051484-59061483 Solanum lycopersicum
Solyc05g047580.2 10.0kb downstream 10.0kb downstream 20556 true SL2.50ch05: 59030928-59051483 Solanum lycopersicum
Solyc05g047580.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 59030928-59040927 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474133 5263 Asterids View MSA
123750129 5271 Pentapetalae View MSA
122795524 5272 Eudicot View MSA
122043543 5273 Angiosperm View MSA
121345283 5274 Embryophyte View MSA
123424991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain