Gene : Solyc02g071230.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) KOG1258 - mRNA processing protein Description:  Pre-mRNA-processing factor 39 (AHRD V1 ***- B2VZM3_PYRTR); contains Interpro domain(s) IPR003107 RNA-processing protein, HAT helix
Genomic Order:  1403 Name:  ? Solyc02g071230.1
Secondary Identifier:  ? PAC:36156723
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc02g071230.1 0.5kb upstream 0.5kb upstream 12358 true SL2.50ch02: 40699970-40712327 Solanum lycopersicum
Solyc02g071230.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch02: 40699970-40700469 Solanum lycopersicum
Solyc02g071230.1 0.5kb downstream 0.5kb downstream 12358 true SL2.50ch02: 40700470-40712827 Solanum lycopersicum
Solyc02g071230.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch02: 40712328-40712827 Solanum lycopersicum
Solyc02g071230.1 1.0kb upstream 1.0kb upstream 12858 true SL2.50ch02: 40699470-40712327 Solanum lycopersicum
Solyc02g071230.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch02: 40699470-40700469 Solanum lycopersicum
Solyc02g071230.1 1.0kb downstream 1.0kb downstream 12858 true SL2.50ch02: 40700470-40713327 Solanum lycopersicum
Solyc02g071230.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch02: 40712328-40713327 Solanum lycopersicum
Solyc02g071230.1 2.0kb upstream 2.0kb upstream 13858 true SL2.50ch02: 40698470-40712327 Solanum lycopersicum
Solyc02g071230.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch02: 40698470-40700469 Solanum lycopersicum
Solyc02g071230.1 2.0kb downstream 2.0kb downstream 13858 true SL2.50ch02: 40700470-40714327 Solanum lycopersicum
Solyc02g071230.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch02: 40712328-40714327 Solanum lycopersicum
Solyc02g071230.1 5.0kb upstream 5.0kb upstream 16858 true SL2.50ch02: 40695470-40712327 Solanum lycopersicum
Solyc02g071230.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch02: 40695470-40700469 Solanum lycopersicum
Solyc02g071230.1 5.0kb downstream 5.0kb downstream 16858 true SL2.50ch02: 40700470-40717327 Solanum lycopersicum
Solyc02g071230.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch02: 40712328-40717327 Solanum lycopersicum
Solyc02g071230.1 10.0kb upstream 10.0kb upstream 21858 true SL2.50ch02: 40690470-40712327 Solanum lycopersicum
Solyc02g071230.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch02: 40690470-40700469 Solanum lycopersicum
Solyc02g071230.1 10.0kb downstream 10.0kb downstream 21858 true SL2.50ch02: 40700470-40722327 Solanum lycopersicum
Solyc02g071230.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch02: 40712328-40722327 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477773 5263 Asterids View MSA
123753236 5271 Pentapetalae View MSA
122790404 5272 Eudicot View MSA
122048891 5273 Angiosperm View MSA
121349849 5274 Embryophyte View MSA
123426942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain