Gene : Solyc02g078060.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR33470:SF4 - ARABINOGALACTAN PROTEIN 31 Description:  pistil extensin-like protein (Fragment) (AHRD V1 ***- Q49I27_9SOLA); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin
Genomic Order:  1688 Name:  ? Solyc02g078060.1
Secondary Identifier:  ? PAC:36159053
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc02g078060.1 0.5kb upstream 0.5kb upstream 1127 true SL2.50ch02: 42864925-42866051 Solanum lycopersicum
Solyc02g078060.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch02: 42865552-42866051 Solanum lycopersicum
Solyc02g078060.1 0.5kb downstream 0.5kb downstream 1127 true SL2.50ch02: 42864425-42865551 Solanum lycopersicum
Solyc02g078060.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch02: 42864425-42864924 Solanum lycopersicum
Solyc02g078060.1 1.0kb upstream 1.0kb upstream 1627 true SL2.50ch02: 42864925-42866551 Solanum lycopersicum
Solyc02g078060.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch02: 42865552-42866551 Solanum lycopersicum
Solyc02g078060.1 1.0kb downstream 1.0kb downstream 1627 true SL2.50ch02: 42863925-42865551 Solanum lycopersicum
Solyc02g078060.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch02: 42863925-42864924 Solanum lycopersicum
Solyc02g078060.1 2.0kb upstream 2.0kb upstream 2627 true SL2.50ch02: 42864925-42867551 Solanum lycopersicum
Solyc02g078060.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch02: 42865552-42867551 Solanum lycopersicum
Solyc02g078060.1 2.0kb downstream 2.0kb downstream 2627 true SL2.50ch02: 42862925-42865551 Solanum lycopersicum
Solyc02g078060.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch02: 42862925-42864924 Solanum lycopersicum
Solyc02g078060.1 5.0kb upstream 5.0kb upstream 5627 true SL2.50ch02: 42864925-42870551 Solanum lycopersicum
Solyc02g078060.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch02: 42865552-42870551 Solanum lycopersicum
Solyc02g078060.1 5.0kb downstream 5.0kb downstream 5627 true SL2.50ch02: 42859925-42865551 Solanum lycopersicum
Solyc02g078060.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch02: 42859925-42864924 Solanum lycopersicum
Solyc02g078060.1 10.0kb upstream 10.0kb upstream 10627 true SL2.50ch02: 42864925-42875551 Solanum lycopersicum
Solyc02g078060.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch02: 42865552-42875551 Solanum lycopersicum
Solyc02g078060.1 10.0kb downstream 10.0kb downstream 10627 true SL2.50ch02: 42854925-42865551 Solanum lycopersicum
Solyc02g078060.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch02: 42854925-42864924 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121365821 5263 Asterids Singleton cluster - no MSA
123745360 5271 Pentapetalae View MSA
122795562 5272 Eudicot View MSA
122051631 5273 Angiosperm View MSA
121349317 5274 Embryophyte View MSA
123381274 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain