Gene : Solyc01g093960.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR11945:SF146 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATED Description:  MADS box transcription factor (AHRD V1 ***- Q2NNC0_ELAGV); contains Interpro domain(s) IPR002487 Transcription factor, K-box
Genomic Order:  2551 Name:  ? Solyc01g093960.2
Secondary Identifier:  ? PAC:36138834
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g093960.2 0.5kb upstream 0.5kb upstream 5655 true SL2.50ch01: 85535132-85540786 Solanum lycopersicum
Solyc01g093960.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 85540287-85540786 Solanum lycopersicum
Solyc01g093960.2 0.5kb downstream 0.5kb downstream 5655 true SL2.50ch01: 85534632-85540286 Solanum lycopersicum
Solyc01g093960.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 85534632-85535131 Solanum lycopersicum
Solyc01g093960.2 1.0kb upstream 1.0kb upstream 6155 true SL2.50ch01: 85535132-85541286 Solanum lycopersicum
Solyc01g093960.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 85540287-85541286 Solanum lycopersicum
Solyc01g093960.2 1.0kb downstream 1.0kb downstream 6155 true SL2.50ch01: 85534132-85540286 Solanum lycopersicum
Solyc01g093960.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 85534132-85535131 Solanum lycopersicum
Solyc01g093960.2 2.0kb upstream 2.0kb upstream 7155 true SL2.50ch01: 85535132-85542286 Solanum lycopersicum
Solyc01g093960.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 85540287-85542286 Solanum lycopersicum
Solyc01g093960.2 2.0kb downstream 2.0kb downstream 7155 true SL2.50ch01: 85533132-85540286 Solanum lycopersicum
Solyc01g093960.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 85533132-85535131 Solanum lycopersicum
Solyc01g093960.2 5.0kb upstream 5.0kb upstream 10155 true SL2.50ch01: 85535132-85545286 Solanum lycopersicum
Solyc01g093960.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 85540287-85545286 Solanum lycopersicum
Solyc01g093960.2 5.0kb downstream 5.0kb downstream 10155 true SL2.50ch01: 85530132-85540286 Solanum lycopersicum
Solyc01g093960.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 85530132-85535131 Solanum lycopersicum
Solyc01g093960.2 10.0kb upstream 10.0kb upstream 15155 true SL2.50ch01: 85535132-85550286 Solanum lycopersicum
Solyc01g093960.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 85540287-85550286 Solanum lycopersicum
Solyc01g093960.2 10.0kb downstream 10.0kb downstream 15155 true SL2.50ch01: 85525132-85540286 Solanum lycopersicum
Solyc01g093960.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 85525132-85535131 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476725 5263 Asterids View MSA
123750627 5271 Pentapetalae View MSA
122793492 5272 Eudicot View MSA
122049609 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain