Gene : Solyc02g088460.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Description:  Chorismate mutase 1 (AHRD V1 **** D2CSU4_PETHY); contains Interpro domain(s) IPR008238 Chorismate mutase of the AroQ class, eukaryotic type
Genomic Order:  2722 Name:  ? Solyc02g088460.2
Secondary Identifier:  ? PAC:36159057
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-3461 Solanum lycopersicum pathologic  
Slycopersicum PWY-3462 Solanum lycopersicum pathologic  
Slycopersicum PWY-3481 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc02g088460.2 0.5kb upstream 0.5kb upstream 4717 true SL2.50ch02: 50545279-50549995 Solanum lycopersicum
Solyc02g088460.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch02: 50549496-50549995 Solanum lycopersicum
Solyc02g088460.2 0.5kb downstream 0.5kb downstream 4717 true SL2.50ch02: 50544779-50549495 Solanum lycopersicum
Solyc02g088460.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch02: 50544779-50545278 Solanum lycopersicum
Solyc02g088460.2 1.0kb upstream 1.0kb upstream 5217 true SL2.50ch02: 50545279-50550495 Solanum lycopersicum
Solyc02g088460.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch02: 50549496-50550495 Solanum lycopersicum
Solyc02g088460.2 1.0kb downstream 1.0kb downstream 5217 true SL2.50ch02: 50544279-50549495 Solanum lycopersicum
Solyc02g088460.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch02: 50544279-50545278 Solanum lycopersicum
Solyc02g088460.2 2.0kb upstream 2.0kb upstream 6217 true SL2.50ch02: 50545279-50551495 Solanum lycopersicum
Solyc02g088460.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch02: 50549496-50551495 Solanum lycopersicum
Solyc02g088460.2 2.0kb downstream 2.0kb downstream 6217 true SL2.50ch02: 50543279-50549495 Solanum lycopersicum
Solyc02g088460.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch02: 50543279-50545278 Solanum lycopersicum
Solyc02g088460.2 5.0kb upstream 5.0kb upstream 9217 true SL2.50ch02: 50545279-50554495 Solanum lycopersicum
Solyc02g088460.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch02: 50549496-50554495 Solanum lycopersicum
Solyc02g088460.2 5.0kb downstream 5.0kb downstream 9217 true SL2.50ch02: 50540279-50549495 Solanum lycopersicum
Solyc02g088460.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch02: 50540279-50545278 Solanum lycopersicum
Solyc02g088460.2 10.0kb upstream 10.0kb upstream 14217 true SL2.50ch02: 50545279-50559495 Solanum lycopersicum
Solyc02g088460.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch02: 50549496-50559495 Solanum lycopersicum
Solyc02g088460.2 10.0kb downstream 10.0kb downstream 14217 true SL2.50ch02: 50535279-50549495 Solanum lycopersicum
Solyc02g088460.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch02: 50535279-50545278 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
121480832 5263 Asterids View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain